Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F63 I1 R1 27 92.8 3572124 97.2% 3472104 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,633,657 C→T C30Y (TGC→TAC)  yjjX ← non‑canonical purine NTP phosphatase, ITPase/XTPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,633,6570CT98.9% 280.0 / NA 89C30Y (TGC→TAC) yjjXnon‑canonical purine NTP phosphatase, ITPase/XTPase
Reads supporting (aligned to +/- strand):  ref base C (1/0);  major base T (41/46);  minor base G (0/1);  total (42/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAA  >  NC_000913/4633526‑4633792
                                                                                                                                   |                                                                                                                                       
ccACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCt                                                                                                                                 <  1:1492605/140‑1 (MQ=255)
ccACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTAGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTTTTCGGAATCTGATGCAATTTGGTAGGTTCCt                                                                                                                                 <  1:683052/140‑1 (MQ=255)
 cACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCtt                                                                                                                                >  2:1117632/1‑140 (MQ=255)
  aCCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTc                                                                                                                               >  1:913256/1‑140 (MQ=255)
       aaaaTCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGa                                                                                                                          <  1:396715/140‑1 (MQ=255)
         aaTCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAg                                                                                                                        <  2:751312/140‑1 (MQ=255)
         aaTCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAg                                                                                                                        <  2:751308/140‑1 (MQ=255)
           tCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGAt                                                                                                                      <  2:1060786/140‑1 (MQ=255)
              gCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGAtctc                                                                                                                   >  2:77941/1‑140 (MQ=255)
                  ctGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGa                                                                                                               <  2:890029/140‑1 (MQ=255)
                  ctGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGa                                                                                                               <  2:889954/140‑1 (MQ=255)
                  ctGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGa                                                                                                               <  2:889868/140‑1 (MQ=255)
                     gAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAAt                                                                                                            <  2:257029/140‑1 (MQ=255)
                          aaaCGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTg                                                                                                       >  1:1423778/1‑140 (MQ=255)
                              ggcggGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCTTTCGCCGAAGATCTCGTGAAATGCCTGCAGa                                                                                                   <  2:1721265/140‑1 (MQ=255)
                              ggcggGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGa                                                                                                   <  2:664558/140‑1 (MQ=255)
                              ggcggGCATTGGCTACCCGAGTTCGTGCGCCAGCGCGCGTTTCCTCACAGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGa                                                                                                   <  2:1145209/140‑1 (MQ=255)
                                          cTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGGGTAATGCCTGCAGAATGGCCTGAAtt                                                                                       >  1:953752/1‑140 (MQ=255)
                                              ccGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAg                                                                                   <  1:1312213/140‑1 (MQ=255)
                                              ccGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAg                                                                                   <  1:1311953/140‑1 (MQ=255)
                                              ccGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAg                                                                                   >  1:838749/1‑140 (MQ=255)
                                                     cttGCGCCAGCGCGCGTTTCCTCACAGCCAAAGGGCTGTTCCGGTACACAGCTCTCGACGGCAACGGATGCAAAATGGTAGGATCCATCGCCGAAGATCTCGTGAAATGCCTGCAGAAAGGCCTGAATTTTAGCGGGAtt                                                                            >  1:371125/3‑140 (MQ=255)
                                                     cGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGAtt                                                                            >  1:764296/1‑140 (MQ=255)
                                                     cGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGAtt                                                                            >  1:762397/1‑140 (MQ=255)
                                                     cGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGAtt                                                                            <  2:1014433/140‑1 (MQ=255)
                                                       tGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATtgg                                                                          >  1:1026043/1‑140 (MQ=255)
                                                       tGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATtgg                                                                          >  2:545374/1‑140 (MQ=255)
                                                             aGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCg                                                                    <  2:218767/140‑1 (MQ=255)
                                                               cgcgcgTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGca                                                                  >  1:1084838/1‑140 (MQ=255)
                                                               cgcgcgTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGca                                                                  >  1:285473/1‑140 (MQ=255)
                                                                gcgcgTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGcac                                                                 <  1:1460304/140‑1 (MQ=255)
                                                                gcgcgTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGAAGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGcac                                                                 <  1:1140965/140‑1 (MQ=255)
                                                                         cTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACtt                                                        <  2:1147689/140‑1 (MQ=255)
                                                                         cTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAAGGGCCTGAAGTTTAGCGGGATTGGTGGTCGCTCGGAGAACtt                                                        >  2:177110/1‑140 (MQ=255)
                                                                            aCTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGt                                                     <  2:849780/140‑1 (MQ=255)
                                                                              tGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGc                                                   >  2:641295/1‑140 (MQ=255)
                                                                              tGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGc                                                   >  2:641470/1‑140 (MQ=255)
                                                                                ccAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCAt                                                 >  1:347206/1‑140 (MQ=255)
                                                                                ccAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCAt                                                 >  1:347231/1‑140 (MQ=255)
                                                                                ccAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCAt                                                 >  1:347149/1‑140 (MQ=255)
                                                                                   aaGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAAt                                              <  1:1723627/140‑1 (MQ=255)
                                                                                   aaGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAAt                                              <  2:72947/140‑1 (MQ=255)
                                                                                   aaGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAAt                                              <  2:576248/140‑1 (MQ=255)
                                                                                   aaGGGCTGTTCCGGTACACCGCTCTCGACGGAAACGGATGCAATATGGTAGGATCCTTCTCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAAt                                              <  2:577196/140‑1 (MQ=255)
                                                                                        cTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCa                                         >  2:1173874/1‑140 (MQ=255)
                                                                                               ggTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCa                                  <  1:1648634/140‑1 (MQ=255)
                                                                                               ggTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCa                                  <  1:269686/140‑1 (MQ=255)
                                                                                               ggTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCa                                  <  1:694157/140‑1 (MQ=255)
                                                                                               ggTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCa                                  <  2:1542833/140‑1 (MQ=255)
                                                                                               ggTACACCGCACTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCa                                  <  1:269769/140‑1 (MQ=255)
                                                                                                gTACACCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAg                                 >  1:826063/1‑140 (MQ=255)
                                                                                                    acCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAg                                                                                   >  1:564446/1‑86 (MQ=255)
                                                                                                    acCGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAg                                                                                   <  2:564446/86‑1 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACtt                                                        <  1:1290490/112‑1 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACtt                                                        >  2:1290490/1‑112 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAt                            >  1:1374831/1‑140 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAt                            >  1:1193403/1‑140 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAt                            >  1:1374846/1‑140 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAt                            >  2:1022532/1‑140 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAt                            >  1:542757/1‑140 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAt                            >  1:1364626/1‑140 (MQ=255)
                                                                                                     ccGCTCTCGACGGCAACGGATGCAATAGGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGACTTTTAGCGGGCTTGGTGGTCGCTCAGACAACTTGGTGCTTAATCAGCATTCGTCAGaaatt                            >  1:1193479/1‑138 (MQ=255)
                                                                                                      cGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAtt                           <  2:157330/140‑1 (MQ=255)
                                                                                                      cGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAtt                           <  2:157383/140‑1 (MQ=255)
                                                                                                      cGCTCTCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAAtt                           <  1:150660/140‑1 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGACAATTaa                         >  2:23476/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         >  2:763412/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         <  2:987048/140‑1 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         >  1:1095103/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         >  2:23794/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         >  1:1409971/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         >  1:141162/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         >  2:1292875/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         >  1:1457738/1‑140 (MQ=255)
                                                                                                        ctctCGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTaa                         >  2:1151079/1‑140 (MQ=255)
                                                                                                          ctcGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACg                       >  1:1179343/1‑140 (MQ=255)
                                                                                                           tcGACGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGt                      <  1:960226/140‑1 (MQ=255)
                                                                                                               cGGCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAca                  <  1:1155316/140‑1 (MQ=255)
                                                                                                                ggCACCGGATGCAATATGGGAGGATCCTTCGCCGAAGATCTCGTGACATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGTTCGCACAGACAACTTGGTGCATTATCAGCATTACTCAGAAAATTAACGTTAcag                 <  1:595946/140‑1 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACTACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag                 >  2:1252246/1‑140 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag                 <  2:507346/140‑1 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag                 >  1:427564/1‑140 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag                 <  2:776777/140‑1 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag                 <  2:1312982/140‑1 (MQ=255)
                                                                                                                ggCAACGGATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAcag                 <  2:507222/140‑1 (MQ=255)
                                                                                                                       gATGCAATATGGTAGGATCCTTCGCCGAAGATCTCTTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGtata          <  2:1376979/140‑1 (MQ=255)
                                                                                                                       gATGCAATATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGtata          <  1:270897/140‑1 (MQ=255)
                                                                                                                            aaTATGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGaa     <  2:550890/140‑1 (MQ=255)
                                                                                                                               atGGTAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGaaaaa  <  2:663736/140‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                       
CCACCCAAAAATCAGCCTCTGGAAGTAAACGGCGGGCATTGGCTACCCGATTTCGTGCGCCAGCGCGCGTTTCCTCACTGCCAAAGGGCTGTTCCGGTACACCGCTCTCGACGGCAACGGATGCAATATGGCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAA  >  NC_000913/4633526‑4633792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A