Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F46 I0 R1
|
166 |
60.6 |
2059618 |
97.1% |
1999889 |
148.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,362,581 |
C→A |
37.3% |
noncoding (46/76 nt) |
pheU ← |
tRNA‑Phe |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,362,581 | 0 | C | A | 37.3%
| 43.9
/ 51.6
| 69 | noncoding (46/76 nt) | pheU | tRNA‑Phe |
| Reads supporting (aligned to +/- strand): ref base C (25/18); new base A (17/9); total (42/27) |
| Fisher's exact test for biased strand distribution p-value = 6.17e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGCTTCTTTTCTGTGT > NC_000913/4362436‑4362727
|
gTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACg < 1:250769/149‑1 (MQ=255)
ggATAATCTGGTTGAGTTCGGTAGCATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGACCTGAAACGAAAAACGGACCTCCGTGGAGGGCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTc < 2:226381/149‑1 (MQ=255)
ggAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAAAGAAAAACGGACATCCGTGGAGGTCCTTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGTAAACTGGGAtttta > 1:190438/1‑148 (MQ=255)
gagaATCTGGGTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGGCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCa < 2:983579/149‑1 (MQ=255)
atattgtGGTTGAGTTCGGTAGTATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAATCGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGATCCAAGGAAACGGGGATTTTCaa < 1:386188/143‑1 (MQ=39)
agaATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGATCCAAGGACACGGGGATTTTCaa > 1:49624/1‑149 (MQ=255)
aaTCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATc < 1:510541/149‑1 (MQ=255)
aTCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGTAATCGAACCAAGGACACGGGGATTTTCAATcc > 1:955132/1‑149 (MQ=255)
tCTGGTTGAGTACGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATccc > 1:751019/1‑149 (MQ=255)
ggTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGACCGTTTATATGAATTTGGTGCCCGGACACGGAATCGACCCAAGGAAACGGAGCTTTTCAATCCCCTg > 1:933014/1‑149 (MQ=255)
ttGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTTTATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCAGct > 2:65958/1‑149 (MQ=255)
ttGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGct > 2:482426/1‑149 (MQ=255)
ttCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTAcc > 2:961180/1‑149 (MQ=255)
tCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCg > 2:1004231/1‑149 (MQ=255)
ggTAGAATTGATTTGGAGGCAGAACGCTTAACTCGTGGCGACCCGAAACCAAACCCGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACTGGGATTTTCAATCCCCTGCTCTACCGAc < 1:236399/149‑1 (MQ=37)
ttGAATTGGAGGCAGAACGCATAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGACCGTTTATAGGAATTTGGTGCCAGGACTCGGAATCCAACCAACTAAAACGGCATTTTCAATCCCCTGCTCAACCGAATGaccaa > 2:953267/1‑145 (MQ=255)
tttGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACCGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTCCCGACTGAGCTATCCg > 2:767968/1‑149 (MQ=255)
ggCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAAc > 1:123038/1‑149 (MQ=255)
gCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCACCTGCTCTACCGACTGAGCTATCAGGTCaagt > 1:637652/1‑147 (MQ=255)
gAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACggg < 2:377836/148‑1 (MQ=255)
gAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACggg > 1:377836/1‑148 (MQ=255)
aTCGTGGCGTCCTGAAACGAAAAACGGACCTCCGGGGAGGTCCGTTTATTTGAATTTGGTGCCCGGACTCGGAATCGACCCAAGGCCACGGGGCTTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAAc > 1:82145/1‑149 (MQ=21)
tCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAAcc > 2:805928/1‑149 (MQ=255)
gggCGTCCGGAAACGACACACGGTCCTCCGGGGCGGGCCGATTATATGAATTTGGTGCCCGGACGCGGAAGCGAACCAAGGACACGGCGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTa < 2:714273/148‑1 (MQ=17)
ggCGTCCTGAAACGAAAAACGGACCTCCGTGTAGGTCCGTTTATATGAATTTGGTGCCCTGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTaa < 2:65177/149‑1 (MQ=255)
tCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTg > 1:278247/1‑149 (MQ=255)
ccTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGc < 1:716854/149‑1 (MQ=255)
tGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGcac > 2:459650/1‑149 (MQ=255)
aaaCGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGCGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACAt > 2:541795/1‑149 (MQ=255)
gAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCg > 2:650937/1‑149 (MQ=255)
gAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACAtggcg > 1:415569/1‑145 (MQ=255)
gAAAAACGGACATCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTACAACGTAAGATGCACATCTCg > 2:760224/1‑149 (MQ=18)
aCGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAAc > 2:429468/1‑149 (MQ=255)
aCGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAAc > 1:153883/1‑149 (MQ=255)
cGGCCCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAATCCGTAATCTGCACATCTCGTCAAcc < 2:851180/149‑1 (MQ=255)
cGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCGAGTCAAcc > 2:615254/1‑149 (MQ=255)
cTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAAtt > 1:368809/1‑149 (MQ=255)
cTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGTATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGCGCGCATTAAACCGTAATCTGCACATATCGTCAACCTAAtt > 1:993439/1‑149 (MQ=255)
tCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAAttt < 2:3394/149‑1 (MQ=255)
tCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAAttt < 2:633629/149‑1 (MQ=255)
cGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCa < 1:961180/149‑1 (MQ=255)
ggAGGTCCGTTTATATGAATTAGGTGCTCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGATCTATCCGGGCAACGGTTCGCATTAATTCTTAATCTGCACATCTCGTCAACCTAATTTCAGTa < 1:79151/149‑1 (MQ=18)
gAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGAATTTCAATCCCCTGCTCTACCGACTGAGCGATCCGGGCAACGGGGCGCATTAATCCGTAATCTGCCCCTCTCGTGCACCTAAATTCAGTaa > 2:176777/1‑149 (MQ=18)
gTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCTTTAAACCGTAATCTCCACATCTCGTCAACCTAATTTCTGTAAAAg < 2:366830/149‑1 (MQ=255)
gTCCGTTTATATGAATTTGGTGCCCGGACACGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGATCTATCCGGGGAACTGGGCGCATTAAACCGTAATCTGGACATCGCGGCATCCTAATTTCAGTAAAAg > 2:563097/1‑149 (MQ=18)
tCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGc < 2:279658/149‑1 (MQ=255)
tttATATGAATTTGGTGCCCGGACTCTGAATCGAACCAAGGACACGGGGATTTTAAATCCCCTGATCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTATACCGTAATCTGCACATCTAGTCAACCTAATTTCAGTAAAACCGAtt > 1:197279/1‑149 (MQ=21)
tatGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTTAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTATAAGCGATTCAAc < 1:628083/149‑1 (MQ=255)
tatGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTTACCCGTAATCTGCACATGTCGTCAACCTAAATTCAGTAAAAGCGATTAAAc > 2:763258/1‑149 (MQ=18)
atGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCAGATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAAcg > 1:292507/1‑148 (MQ=255)
atGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCTTTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACt > 1:1008515/1‑149 (MQ=255)
tGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCACTCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTg > 2:537967/1‑149 (MQ=255)
aaTTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACAACTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTTCt > 1:608922/1‑149 (MQ=255)
aTTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCACCCTAATTTCAGTAAAAGCGATTCAACTGCtt > 1:381471/1‑149 (MQ=255)
aTTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCtt > 2:542984/1‑149 (MQ=255)
tttGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTa < 1:1004231/149‑1 (MQ=255)
gTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACGGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGAt > 2:788389/1‑149 (MQ=255)
tGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAAtt < 2:165408/119‑1 (MQ=255)
tGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAAtt > 1:165408/1‑119 (MQ=255)
gACTCGGAATCGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTCCCGACTGAGCTAACCGGGCAACGGGGCGCATTACAACGTAATCTGCACATCTCGTCAACCTAATTTCAGAAAAAGCGATTCACCTGCATAAGATTGCGGCa > 2:213534/1‑149 (MQ=21)
tCGTAATCGAAACTAGGTAACGGGGATTTTCAATCCACTGATCTACCTACTGAGCTATCCGGGCAAAGTGTCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTTCTTAAGATTGCGGCAAAt < 2:933014/149‑1 (MQ=255)
cGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATc < 2:137045/149‑1 (MQ=255)
gAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGc < 2:278247/149‑1 (MQ=255)
tCGAACCAAGGACACGGGGACTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGcttc < 1:445514/149‑1 (MQ=255)
cGAACCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCTACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGcttct < 1:760224/149‑1 (MQ=255)
aaCCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGCTTCttt > 2:592606/1‑149 (MQ=255)
aaCCAAGGAAACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGCTTCttt > 1:759780/1‑149 (MQ=255)
cAAGGAAACTGGGATTTTCAATCCCCTGCTCTACCGACTGTGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGGCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGCTTCTTTTCt < 1:593581/149‑1 (MQ=255)
gACACGGGGATTTTCAATGCCCTGCTCTACCGACTGAGCTATCCGGGGAACGGGGCGCATTAAATCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGCTTCTTTTCTgtgt < 2:751019/149‑1 (MQ=255)
|
GTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGATTGCGGCAAATCGCTTCTTTTCTGTGT > NC_000913/4362436‑4362727
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
