Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F53 I19 R3 125 83.6 3029080 95.4% 2889742 127.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,724,274 C→T E185K (GAA→AAA)  U712_19200 ← SacPA operon antiterminator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,724,2740CT100.0% 479.7 / NA 133E185K (GAA→AAA) U712_19200SacPA operon antiterminator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (59/74);  total (59/74)

Only 100 of 133 total aligned reads displayed.

TGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGACTGACTGCGTATCTCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTCTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGAAGAGA  >  CP006881/3724139‑3724397
                                                                                                                                        |                                                                                                                           
tGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAt                                                                                                                          <  1:85064/139‑1 (MQ=255)
     tAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTtct                                                                                                                     <  1:34721/139‑1 (MQ=255)
        aGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTa                                                                                                                  >  4:128930/1‑139 (MQ=255)
           aTCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTTACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTATCGATTAAAGTATTG‑TTTTATTTTCTCTATCa                                                                                                               <  5:313745/139‑1 (MQ=255)
             ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt                                                                                                             >  3:71899/1‑139 (MQ=255)
             ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt                                                                                                             >  8:24353/1‑139 (MQ=255)
             ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt                                                                                                             >  5:305557/1‑139 (MQ=255)
             ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt                                                                                                             >  7:70947/1‑139 (MQ=255)
             ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt                                                                                                             >  7:58875/1‑139 (MQ=255)
             ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTAGTG‑TTTTATTTTCTCTATCAtt                                                                                                             >  4:345278/1‑139 (MQ=255)
                ctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCt                                                                                                          <  7:364370/139‑1 (MQ=255)
                       aTACGATGGATCGCTTCAATTGATTCCAACCGGCTGACCGCGTATCGGAAATGCGTGACAAGGCGGTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                                                                                   <  8:60412/139‑1 (MQ=255)
                       aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                                                                                   <  2:128785/139‑1 (MQ=255)
                       aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                                                                                   <  8:219468/139‑1 (MQ=255)
                       aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                                                                                   <  1:202024/139‑1 (MQ=255)
                       aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                                                                                   <  4:249855/139‑1 (MQ=255)
                        tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAtt                                                                                                                         <  4:242440/116‑1 (MQ=255)
                        tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAtt                                                                                                                         >  3:242440/1‑116 (MQ=255)
                        tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCAt                                                                                                  >  1:66229/1‑139 (MQ=255)
                             tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                                                                                             >  3:23829/1‑139 (MQ=255)
                             tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                                                                                             >  2:48576/1‑139 (MQ=255)
                             tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                                                                                             >  3:187901/1‑139 (MQ=255)
                             tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                                                                                             >  2:217567/1‑139 (MQ=255)
                             tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                                                                                             >  4:131974/1‑139 (MQ=255)
                             tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                                                                                             >  8:362020/1‑139 (MQ=255)
                             tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCCTATCGCAAAAGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGAATAAAGAATTG‑TATTATTTTCTCTAACAATTCTTTTATAAtcgac                                                                                              >  4:61027/1‑134 (MQ=255)
                             tGGAGCGCTTCATTTGATACCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                                                                                             >  3:176836/1‑139 (MQ=255)
                               gAGCGCTTCATTTGATTCCTACCGGCTGACCGCGTATCGATAATGCTTGACAAGGCGTTGATAGGTAATGCTGTTTTCATCCACCTTTCGATTATAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                                                                                           <  3:61027/139‑1 (MQ=255)
                               gAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                                                                                           <  2:72889/139‑1 (MQ=255)
                               gAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                                                                                           <  8:201030/139‑1 (MQ=255)
                               gAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                                                                                           <  3:131974/139‑1 (MQ=255)
                                    cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCtt                                                                                      <  4:104772/139‑1 (MQ=255)
                                    cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCt                                                                                       >  4:216193/1‑138 (MQ=255)
                                     ttCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCtt                                                                                      >  7:39137/1‑138 (MQ=255)
                                       cATATGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                                                                                   >  7:17771/1‑123 (MQ=255)
                                       cATATGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                                                                                   <  8:17771/123‑1 (MQ=255)
                                         tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                                                                                 <  2:77377/139‑1 (MQ=255)
                                         tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                                                                                 <  2:3451/139‑1 (MQ=255)
                                         tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                                                                                 <  6:95920/139‑1 (MQ=255)
                                         tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                                                                                 <  7:137477/139‑1 (MQ=255)
                                         tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                                                                                 <  7:200246/139‑1 (MQ=255)
                                           tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTGTTTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                                                                                 <  5:200225/138‑1 (MQ=255)
                                           tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc                                                                                <  6:248366/138‑1 (MQ=255)
                                           tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc                                                                                <  1:153002/138‑1 (MQ=255)
                                           tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc                                                                                <  2:66229/138‑1 (MQ=255)
                                             aTTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTg                                                                              <  8:39137/138‑1 (MQ=255)
                                              ttCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa                                                                            <  1:69797/139‑1 (MQ=255)
                                               tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTTTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa                                                                            >  7:204762/1‑138 (MQ=255)
                                               tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc                                                                                <  6:218644/134‑1 (MQ=255)
                                               tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc                                                                                >  5:218644/1‑134 (MQ=255)
                                               tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa                                                                            >  4:344625/1‑138 (MQ=255)
                                               tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTATATAATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa                                                                            >  7:158924/1‑138 (MQ=255)
                                                ccAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAAt                                                                           <  6:14246/138‑1 (MQ=255)
                                                   aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCt                                                                                                          >  8:141265/1‑104 (MQ=255)
                                                   aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc                                                                                <  6:358206/130‑1 (MQ=255)
                                                   aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACAt                                                                       >  4:293033/1‑139 (MQ=255)
                                                    ccggcagaccgCGGATCACAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATg                                                                      <  3:6394/133‑1 (MQ=255)
                                                       gctgaccgCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGctc                                                                   >  1:271054/2‑139 (MQ=255)
                                                             cgCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGca                                                             <  1:363967/138‑1 (MQ=255)
                                                               cGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAATTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGTTCGTATGGTTCAGCGCTGAATACATGATCAACGcaaa                                                           >  2:377257/1‑137 (MQ=255)
                                                                   tcgcAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGcatccat                                                        <  4:67240/135‑1 (MQ=255)
                                                                     gcAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCtt                                                     <  4:71899/138‑1 (MQ=255)
                                                                     gcAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCtt                                                     <  7:247316/138‑1 (MQ=255)
                                                                     gcAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCtt                                                     <  8:23514/138‑1 (MQ=255)
                                                                       aaaTGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCg                                                   <  3:128930/139‑1 (MQ=255)
                                                                       aaaTGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCg                                                   <  3:293033/139‑1 (MQ=255)
                                                                          tGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCCTCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATGATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATCCACTCCGCATACAACTTCGCCg                                                >  5:68565/1‑139 (MQ=255)
                                                                            cGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTa                                              <  1:377257/139‑1 (MQ=255)
                                                                            cGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTa                                              <  8:58875/139‑1 (MQ=255)
                                                                            cGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTa                                              <  4:176836/139‑1 (MQ=255)
                                                                            cGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTa                                              <  3:216193/139‑1 (MQ=255)
                                                                            cGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTa                                              <  4:373995/139‑1 (MQ=255)
                                                                            cGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTa                                              <  6:305557/139‑1 (MQ=255)
                                                                              tGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATg                                            >  2:244456/1‑139 (MQ=255)
                                                                              tGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATATCTTAGATCATGGTCGTATGCTTCAGCGATGAATAAATGCTCTCCGCATCCATCTTCGCCGTAtt                                            >  5:156628/1‑138 (MQ=255)
                                                                              tGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTAGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTAAGCGCTGAATACATGCTATCCGCATCCATCTTAGCCCTATg                                            >  7:146741/1‑139 (MQ=255)
                                                                                aCAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATgg                                           <  5:375766/138‑1 (MQ=255)
                                                                                    ggCGTTGATAGGAAATGCTGTTTTCCTCCACCTTTCGATTAAAGAATTG‑TTTTATTTTCTCAATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGCtgtg                                      <  6:273795/139‑1 (MQ=255)
                                                                                    ggCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGAtgtg                                      <  7:218733/139‑1 (MQ=255)
                                                                                    ggCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGAtgt                                       >  2:221271/1‑138 (MQ=255)
                                                                                        ttGATAGGATATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAgg                                  <  1:99650/139‑1 (MQ=255)
                                                                                          gATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAggg                                 <  8:70947/138‑1 (MQ=255)
                                                                                          gATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAggg                                 <  3:102721/138‑1 (MQ=255)
                                                                                          gATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAggg                                 <  7:243882/138‑1 (MQ=255)
                                                                                               gAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGcatccat                                                        <  8:182561/110‑1 (MQ=255)
                                                                                               gAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAata                            >  3:127320/1‑138 (MQ=255)
                                                                                                aaaTGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAggg                                 <  4:228678/132‑1 (MQ=255)
                                                                                                   tGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCg                                                   >  6:313063/1‑111 (MQ=255)
                                                                                                   tGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCg                                                   <  5:313063/111‑1 (MQ=255)
                                                                                                     cTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCg                     >  8:29898/1‑139 (MQ=255)
                                                                                                          ttCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGCATACATGCTCTCCGCATCCATCTTAGCCGTATGGATGTGATGGGCAATATAACCCGCGTCa                >  1:12096/1‑139 (MQ=255)
                                                                                                             aTCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGcatccat                                                        >  1:285881/1‑96 (MQ=255)
                                                                                                             aTCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGcatccat                                                        <  2:285881/96‑1 (MQ=255)
                                                                                                              tCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCtt            <  7:24353/139‑1 (MQ=255)
                                                                                                                  ccTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAAAACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAAACCGCGTCATCTTCAgg        >  6:79487/1‑139 (MQ=255)
                                                                                                                        gATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAgaga  <  7:362020/139‑1 (MQ=255)
                                                                                                                             aaGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAggg                                 <  1:33136/103‑1 (MQ=255)
                                                                                                                             aaGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAggg                                 >  2:33136/1‑103 (MQ=255)
                                                                                                                                  ttG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAgaga  <  2:169923/129‑1 (MQ=255)
                                                                                                                                  ttG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGCAgaga  >  1:169923/1‑129 (MQ=255)
                                                                                                                                        |                                                                                                                           
TGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGACTGACTGCGTATCTCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTCTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCCATCTTCGCCGTATGGATGTGAAGGGCAATATAACCCGCTTCATCTTCAGGAAGAGA  >  CP006881/3724139‑3724397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A