Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F55 I0 R1 217 81.2 3243344 95.0% 3081176 126.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,929,261 T→G 22.4% E191A (GAG→GCG)  U712_20255 ← General stress protein 30

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,929,2610TG22.4% 124.4 / 5.5 78E191A (GAG→GCG) U712_20255General stress protein 30
Reads supporting (aligned to +/- strand):  ref base T (19/38);  new base G (17/2);  total (38/40)
Fisher's exact test for biased strand distribution p-value = 2.95e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCTACCGTATCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCAGTGTTTGCGTCTCACGCGCAGCAATCGTTAAGTTTGTATTTTGATGGTAC  >  CP006881/3929126‑3929398
                                                                                                                                       |                                                                                                                                         
tCTACCGTATCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGa                                                                                                                                        >  5:114829/1‑139 (MQ=255)
tCTACCGTATCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTACGTCAGACACATACTCCTTAACCTCTCTTAAAATAAATACAACTCCGTCCCGATCGa                                                                                                                                        >  2:83037/1‑139 (MQ=255)
     cGTATCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGaccgct                                                                                                                                   >  8:347073/1‑134 (MQ=255)
       tATCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGAGCTCTcg                                                                                                                                 >  5:287368/1‑139 (MQ=255)
       gaTCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTcg                                                                                                                                 <  1:392308/138‑1 (MQ=255)
        aTCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCCCGGGCGCTCTcgc                                                                                                                                >  4:379227/1‑139 (MQ=255)
         tCCAGCACCTTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTCAGAAATAAAATCTTCGTCAGTAACTTTCTCCTTATACGCTCAAAAAAAAAAGAGAAATCCTTCACTCTCCCGGTCTcgcg                                                                                                                               >  2:237429/1‑139 (MQ=255)
         tCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCTCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCCCGCTCTcgcg                                                                                                                               >  6:327786/1‑139 (MQ=255)
         tCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATATTCGTCAGTCACTTTCTCCTTATCCTCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCtctctct                                                                                                                               >  2:77687/1‑136 (MQ=255)
            aGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGCGCGCTCGCGGca                                                                                                                            >  4:129561/1‑139 (MQ=255)
              cACCGTATCGTTACGCTCTTTGTAAGTTTTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCATTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGcaca                                                                                                                          <  4:98778/139‑1 (MQ=255)
              cACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGcaca                                                                                                                          <  4:176156/139‑1 (MQ=255)
              cACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGcaca                                                                                                                          <  8:197058/139‑1 (MQ=255)
              cACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGGGCGCGCGGGGcgcc                                                                                                                          >  3:77528/1‑136 (MQ=255)
                   tATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAg                                                                                                                                       >  4:266508/1‑121 (MQ=255)
                   tATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAg                                                                                                                                       <  3:266508/121‑1 (MQ=255)
                   tATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCCCAaaata                                                                                                                     >  4:128839/1‑138 (MQ=255)
                   tATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGCGCGCTCGCGGCACAatat                                                                                                                      >  6:296921/1‑138 (MQ=255)
                   tATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTGTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGCGCTGTCCCGGcgcacgaa                                                                                                                      >  2:392308/1‑134 (MQ=255)
                     tctgTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAACTAACGAGAACGCCGTCCCGCGCGAGCTCTCGCGGCACAATATcc                                                                                                                    <  5:70338/135‑1 (MQ=255)
                        gTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAg                                                                                                                 >  6:396552/1‑138 (MQ=255)
                         tACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGa                                                                                                               <  1:262409/139‑1 (MQ=255)
                           cGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGAGCGCTCGCCGCACGAAATCCAAGGaa                                                                                                              >  1:161653/1‑138 (MQ=255)
                             ctctGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGAGCTGGCGGGGGGCAAGATCCAAGCAAAgg                                                                                                           >  3:326861/1‑138 (MQ=255)
                              tctGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCCCGCACTCGCGGCACCAAAACAAAGGAAAgaa                                                                                                          >  2:287158/1‑137 (MQ=255)
                               ctGTGTAAGTTGTTTTTTCTGCCAATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGACCACCACGAGCTGGCGCGGCACAATAACGAAGaaaacaa                                                                                                          >  1:195566/1‑135 (MQ=255)
                                  tgtAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCAcc                                                                                                        <  5:343272/137‑1 (MQ=255)
                                  tgtAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCAcc                                                                                                        <  6:114829/137‑1 (MQ=255)
                                  tgtAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCa                                                                                                       <  3:379227/138‑1 (MQ=255)
                                   gtAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGAGCGCACGCGGCACAATATACAAGGAAAGCACCaa                                                                                                      >  6:200151/1‑137 (MQ=255)
                                      tgttgttTTTTCTGCCCATTGCTTCTTCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTc                                                                                                   <  2:357855/137‑1 (MQ=255)
                                      aGTTGTTTTTTCTGCCCATTGCTTCATCTGTTAAATAAAATCTTCGTCAGTCAATTTATCCTTTTCCGATCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGATCTCGCGGCACAATATCCAAGGAAATCACCATGTc                                                                                                   <  1:237429/138‑1 (MQ=255)
                                      aGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTc                                                                                                   <  5:296921/138‑1 (MQ=255)
                                      aGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTc                                                                                                   <  1:77687/138‑1 (MQ=255)
                                      aGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTc                                                                                                   <  5:123232/138‑1 (MQ=255)
                                      aGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTc                                                                                                   <  7:98307/138‑1 (MQ=255)
                                       gttgttTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGcac                                                                                                                           >  6:21931/1‑113 (MQ=255)
                                       gttgttTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGcac                                                                                                                           <  5:21931/113‑1 (MQ=255)
                                       gttgttTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGAGCGCTCGCGGCACAATATACAAAGAAAACACCaataccg                                                                                                 >  4:174801/1‑133 (MQ=255)
                                          gttTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGCGCACTCGCGGCCCAATATCCAAGCAAAGCACCCAGTCCgggg                                                                                              >  8:98307/1‑137 (MQ=255)
                                             ttttCTGCCCATTTCTTCATCTGTGCAATAAAATCTGCGCCAGTCACTTTCTCCTTATCCGCACTAAAAATAAACAGAACGCCGTCCCGCTCGAGCTCTCGCGGCAGAATATCCAAGGAAAGCACCATGTCCGGTGTa                                                                                            <  4:219042/138‑1 (MQ=255)
                                                 cTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGa                                                                                        <  1:258066/138‑1 (MQ=255)
                                                 cTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCAGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGa                                                                                        <  1:83037/138‑1 (MQ=255)
                                                    ctcATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATca                                                                                     <  5:327786/136‑1 (MQ=255)
                                                    cccATTGCTTCTTCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCGCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCTAAGGAAAGCACCATGTCCGGTGTAAAGAt                                                                                       <  1:287158/136‑1 (MQ=255)
                                                    cccATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGAt                                                                                       <  5:291528/136‑1 (MQ=255)
                                                    cccATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATca                                                                                     <  3:174801/138‑1 (MQ=255)
                                                      cATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACAt                                                                                  <  6:257961/139‑1 (MQ=255)
                                                       aTTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACAtt                                                                                 <  4:255308/139‑1 (MQ=255)
                                                         tGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCAGCTCTTAAAATAAAGAGAACGCCGTCCCGCACGCGCACTAGCGGCACAAAATAAAAGCAAAGAAACATGTCAGGTGTAAACATCACAt                                                                                  >  7:401000/1‑136 (MQ=255)
                                                         tGCTTCATCTGTGAAATAAAATCTTCGGCAGTCATTTTCTCCTTATCGGCTATTAAAATAAATAGAACGCCGTCCGGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCGGGTGTAAAGATCACATTg                                                                                <  1:314632/138‑1 (MQ=255)
                                                          gCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTgg                                                                               <  5:396552/138‑1 (MQ=255)
                                                                   gtgAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCCCGCGCCCACGCCCGGCCCAATAAAAAAAGAAAGCACCAAGTGAGGGGTAAACAAAACAATGGAGTTGGAGGt                                                                     >  6:268584/1‑139 (MQ=255)
                                                                    tgAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGtc                                                                    <  5:200151/139‑1 (MQ=255)
                                                                    tgAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGt                                                                     <  5:268584/138‑1 (MQ=255)
                                                                            aaTCTTCGTCAGTCACTTTCTCCTTATCCGTTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTcac                                                            <  3:294252/139‑1 (MQ=255)
                                                                            aaTCTTCGTCAGTCACTTTCTCATTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTcac                                                            <  6:11811/139‑1 (MQ=255)
                                                                                    tcagtcaCTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCa                                                    <  3:129561/139‑1 (MQ=255)
                                                                                    tcagtcaCTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCa                                                    <  3:128839/139‑1 (MQ=255)
                                                                                                  cTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGCGCTCTCGCGGGCCCATATCCAAGGAAAGGACCATGTCACGGGGAAAGATAACATTGGAGTTGAAGGACTCTTTCACAACAACCAGGGGTTTCGGCTCa                                      >  6:147487/1‑139 (MQ=255)
                                                                                                     aTCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCGCGAGCTCTCGCGGCGCAAAATACAAGGAAAGCAACAAGTACGGTGAAAAGATCAAAATGGAGTTGTAGGTGTCTTTGAAAACAAACAGGGTTTGGGTGTAAcgc                                   >  8:230302/1‑139 (MQ=255)
                                                                                                         gcgctTAAAATAACGAGAACGCCGTCCCGCGCGAGCGCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCAGTGTTTGCGTCTCACGCgcag                               <  1:328509/136‑1 (MQ=255)
                                                                                                          ctctTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCGCGCGGCACAAAATCAAAGGAAAGCCCCATGTCCGGTGTAAAGATCACATTTGAGTTGAAGGTCTGTTTGACAACAGACAGGGTTTGGGTCTCACGCgcagc                              >  6:260810/1‑139 (MQ=255)
                                                                                                          ctctTAAAATAAAGAGAACGCCGTCCCGCGCGAGCTCGCGCGGCCCAAAATAAAAGGAAAGAACCAAGGACGGGGTTAAGATCACAATTGATGTGATTTTCTGTTTAAAAAACACCAGTGTTTTGTTCTCACGCccacc                              >  6:265566/1‑137 (MQ=255)
                                                                                                          ctctTAAAATAAAGAGAACGCCGTCCCGCGCGAGCTCGCGCGGCACAAGATACAAGGAAAGCACCCTGTCCGGTGTAAAGATAACATTTGAGTTGAAGGGATCTTTAACACCATCCAGGGTTTTCGTCACACGcgccgc                              >  8:146865/1‑139 (MQ=255)
                                                                                                            ctTAAAATAAAGAGAACGCCGTCCCGCTCGATCTCTAGCGGCACAATATCCAACGAAAGCAACAAGTCCGGAGTAAATATCACATTTGAGTTTAAGGTCGCATTAAAAACCTCCAGTGTTTGCGTCTCACGCgcagca                             >  8:389775/1‑138 (MQ=255)
                                                                                                             ttAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCAGTGTTTGCGTCTCACGCgcagca                             <  4:77528/137‑1 (MQ=255)
                                                                                                                aaaTAAAGAGATCTACGTCCCGCTCGAGCTCTCGAGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTTAAGTTCACATTGGATTTGTTGGTTTGTTTTAATTAATAAAGTGTTTGAGTCTCACGCgcagcattgtt                        <  6:400941/139‑6 (MQ=255)
                                                                                                                     aaGAGAACGCCGTCCCGCTCGCGCTCTCGCGGCACAAAATACAAGGAAAGCACCAAGTCCGGGGTAAAGATCACATTGGAGTTGAAGGTAGCTTTCACAACATCCAGTGTTTGCGTCTCACGCGCCGCAATAGTTaatt                   >  4:288200/1‑137 (MQ=255)
                                                                                                                       gagaACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCAACATGTACGGTGTAAAGATCACAATGGAGGTGAATGTCTCTTTCACAACATCCCGTGTTTGCGTCTCCCGCGCAGCAATCGTTAAGttt                 >  8:100666/1‑139 (MQ=255)
                                                                                                                           aCGCCGTCCCGCTCGAGCACACGCGGGCCAATAAACAAGCAAACCACAATGTGCGCAGTTAACATCACAATGGAGTTGAAGGTCGAGATACCAACCTCAAATGTTTTAGTCTCACGCGCACCAAAACTTAAGTTTTTAt             >  4:79722/1‑139 (MQ=255)
                                                                                                                            cGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCAGTGTTTGCGTCTCACGCGCAGCAATCGTTAAGTTTGTAtt            >  2:318104/1‑139 (MQ=255)
                                                                                                                               cGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCCTGTCCGGTGTAAAGATCCCATTTGAGTTGAAGGTCTCGTTCACAACCTCCAGTGTTTGCGTCTCACGCGCAGCAATCGGTTAGTTTGTATTTTg         >  8:192128/1‑139 (MQ=255)
                                                                                                                               cGTCCCGCGCGAGCTCTCGCGGCCCAATATACAAGGAAAGCACCAAGTCCGGTGTTAAGATACCATTGGAGTTGCAGGTCTCTTTCACAACATGCAGTGTTTGCGTCTCACAGCCCGCCATCGTTAAGTTTTTATTTTg         >  8:369891/1‑139 (MQ=255)
                                                                                                                                 tCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCAGTGTTTGCGTCTCACTCTCTTCAATCGTTAAGTTTGTATTTTGAt       <  1:216288/139‑1 (MQ=255)
                                                                                                                                 tCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCAGTGTTTGCGTCTCACGCGCAGCAATCGTTAAGTTTGTATTTTGAt       <  5:265566/139‑1 (MQ=255)
                                                                                                                                   ccGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCAGTGTTTGCGTCTCACGCGCAGCAATCGTTAAGTTTGTATTTTGATgg     <  3:375299/139‑1 (MQ=255)
                                                                                                                                      cTCGCGCTCTCGCGGCACCATATCCAAGGAAAGCACCCTGTCCGGGGGTAAGATCACATTGGAGTTGAAGGGCTGTTTCGCAACCTCCAGTGTTTTGGGCTCCCGCGCCGCAATCGTTAAGTTTGTATTTTTATgggtc  >  4:234587/1‑136 (MQ=255)
                                                                                                                                       |                                                                                                                                         
TCTACCGTATCCAGCACCGTATCGGTACGCTCTGTGTAAGTTGTTTTTTCTGCCCATTGCTTCATCTGTGAAATAAAATCTTCGTCAGTCACTTTCTCCTTATCCGCTCTTAAAATAAAGAGAACGCCGTCCCGCTCGAGCTCTCGCGGCACAATATCCAAGGAAAGCACCATGTCCGGTGTAAAGATCACATTGGAGTTGAAGGTCTCTTTCACAACATCCAGTGTTTGCGTCTCACGCGCAGCAATCGTTAAGTTTGTATTTTGATGGTAC  >  CP006881/3929126‑3929398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A