mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 22,700 | T→G | 17.7% | Q150H (CAA→CAC) | U712_00075 ← | Deoxyadenosine/deoxycytidine kinase |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 95,849 | T→A | 29.3% | intergenic (+8/‑10) | U712_20935 → / → U712_20940 | tRNA‑Gly/tRNA‑Leu |
| RA | CP006881 | 125,619 | C→T | 100% | R21C (CGT→TGT) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 199,196 | A→C | 11.5% | N232T (AAC→ACC) | U712_00905 → | Phosphoglucosamine mutase |
| RA | CP006881 | 246,207 | C→A | 11.2% | Q37K (CAA→AAA) | U712_01145 → | Uncharacterized protein ybfJ |
| RA | CP006881 | 262,762 | T→C | 5.3% | D471G (GAC→GGC) | U712_01235 ← | putative sodium/glutamine symporter glnT |
| RA | CP006881 | 263,409 | A→C | 20.1% | A255A (GCT→GCG) | U712_01235 ← | putative sodium/glutamine symporter glnT |
| RA | CP006881 | 272,046 | T→G | 13.6% | L81R (CTT→CGT) | U712_01270 → | putative glucarate dehydratase |
| RA | CP006881 | 353,697 | T→G | 17.2% | F279V (TTT→GTT) | U712_01685 → | Ferredoxin‑‑NADP reductase 1 |
| RA | CP006881 | 405,089 | T→G | 17.7% | K304T (AAG→ACG) | U712_01835 ← | putative transporter ycxC |
| RA | CP006881 | 425,115 | G→A | 6.1% | S414S (AGC→AGT) | U712_01935 ← | putative ABC transporter permease yclI |
| RA | CP006881 | 570,798 | C→T | 6.1% | W104* (TGG→TAG) | U712_02810 ← | putative transporter YdgF |
| RA | CP006881 | 578,474 | G→A | 63.4% | R61R (CGC→CGT) | U712_02845 ← | UPF0721 transmembrane protein ydhB |
| RA | CP006881 | 628,469 | G→A | 12.5% | G610G (GGC→GGT) | U712_03080 ← | Transcription activator gutR |
| RA | CP006881 | 649,390 | T→G | 15.7% | N70T (AAC→ACC) | U712_03175 ← | GABA permease |
| RA | CP006881 | 735,153 | T→G | 19.0% | intergenic (+23/‑44) | U712_03560 → / → U712_03565 | Rhamnogalacturonan lyase yesW/Rhamnogalacturonan lyase yesX |
| RA | CP006881 | 804,403 | T→G | 23.7% | C238W (TGT→TGG) | U712_03910 → | PTS system N‑acetylglucosamine‑specific EIICB component |
| RA | CP006881 | 842,676 | A→C | 15.8% | D214A (GAC→GCC) | U712_04085 → | Acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha |
| RA | CP006881 | 907,728 | G→T | 100% | G70C (GGT→TGT) | U712_04440 → | Peroxide operon regulator |
| RA | CP006881 | 986,184 | C→A | 25.1% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 993,550 | A→C | 23.0% | K84N (AAA→AAC) | U712_04850 → | General stress protein 69 |
| RA | CP006881 | 1,033,545 | T→A | 7.6% | K244N (AAA→AAT) | U712_05060 ← | Foldase protein prsA |
| RA | CP006881 | 1,041,657 | T→G | 14.8% | W150G (TGG→GGG) | U712_05120 → | Protein ecsB |
| RA | CP006881 | 1,044,161 | T→G | 23.7% | S72R (AGC→CGC) | U712_05130 ← | Putative amidohydrolase yhaA |
| RA | CP006881 | 1,069,797 | T→G | 23.8% | R80R (CGT→CGG) | U712_05265 → | Putative quinone oxidoreductase YhfP |
| RA | CP006881 | 1,182,854 | T→C | 5.1% | intergenic (‑670/‑29) | U712_05865 ← / → U712_05870 | Tryptophanyl‑tRNA synthetase/Oligopeptide‑binding protein oppA |
| RA | CP006881 | 1,252,163 | T→G | 28.1% | intergenic (+28/‑169) | U712_06305 → / → U712_06310 | Uncharacterized protein yjgD/putative lipoprotein yjhA |
| RA | CP006881 | 1,309,312 | T→C | 5.4% | V146A (GTG→GCG) | U712_06660 → | Phage‑like element PBSX protein xepA |
| RA | CP006881 | 1,359,209 | T→C | 5.5% | L54L (TTA→CTA) | U712_06950 → | Magnesium transporter mgtE |
| RA | CP006881 | 1,363,491 | A→T | 5.9% | K120I (AAA→ATA) | U712_06980 → | Uncharacterized protein ykoP |
| RA | CP006881 | 1,474,968 | G→T | 26.7% | S88* (TCA→TAA) | U712_07575 ← | Uncharacterized protein ykoA |
| RA | CP006881 | 1,528,836 | C→A | 24.6% | intergenic (‑89/‑51) | U712_07870 ← / → U712_07875 | Uncharacterized protein ylbA/Uncharacterized protein ylbB |
| RA | CP006881 | 1,535,503 | T→G | 13.1% | V162G (GTT→GGT) | U712_07925 → | putative NTE family protein ylbK |
| RA | CP006881 | 1,604,910 | C→T | 8.0% | A67A (GCC→GCT) | U712_08250 → | Hypothetical Protein |
| RA | CP006881 | 1,612,092 | A→G | 8.3% | K372K (AAA→AAG) | U712_08285 → | Ribosomal RNA small subunit methyltransferase B |
| RA | CP006881 | 1,626,502 | G→A | 8.9% | A306A (GCG→GCA) | U712_08355 → | Phosphate acyltransferase |
| RA | CP006881 | 1,653,593 | G→A | 31.0% | G146D (GGC→GAC) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,666,480 | G→C | 17.9% | Q257H (CAG→CAC) | U712_08575 → | Flagellar motor switch phosphatase FliY |
| RA | CP006881 | 1,666,671 | T→A | 100% | L321* (TTA→TAA) | U712_08575 → | Flagellar motor switch phosphatase FliY |
| RA | CP006881 | 2,044,471 | A→G | 8.6% | N171S (AAT→AGT) | U712_10115 → | Transcriptional regulatory protein desR |
| RA | CP006881 | 2,045,795 | T→G | 20.4% | T75P (ACC→CCC) | U712_10120 ← | Cell wall‑binding protein yocH |
| RA | CP006881 | 2,060,039 | G→A | 6.8% | S325S (AGC→AGT) | U712_10205 ← | Dihydrolipoyllysine‑residue succinyltransferase component of 2‑oxoglutarate dehydrogenase complex |
| RA | CP006881 | 2,098,087 | A→C | 24.1% | A34A (GCT→GCG) | U712_10435 ← | Hypothetical Protein |
| RA | CP006881 | 2,136,054 | C→A | 37.6% | V415L (GTA→TTA) | U712_10675 ← | Xanthine permease |
| RA | CP006881 | 2,142,739 | T→G | 19.7% | K249N (AAA→AAC) | U712_10705 ← | HTH‑type transcriptional regulator kdgR |
| RA | CP006881 | 2,181,889 | A→T | 7.0% | D182E (GAT→GAA) | U712_10925 ← | Menaquinol‑cytochrome c reductase cytochrome b subunit |
| RA | CP006881 | 2,187,676 | A→G | 11.8% | G184G (GGT→GGC) | U712_10960 ← | Prephenate dehydrogenase |
| RA | CP006881 | 2,187,688 | T→C | 10.8% | E180E (GAA→GAG) | U712_10960 ← | Prephenate dehydrogenase |
| RA | CP006881 | 2,187,691 | C→T | 9.8% | P179P (CCG→CCA) | U712_10960 ← | Prephenate dehydrogenase |
| RA | CP006881 | 2,270,704 | C→A | 5.6% | T457T (ACG→ACT) | U712_11465 ← | Malate‑2H(+)/Na(+)‑lactate antiporter |
| RA | CP006881 | 2,286,365 | A→C | 17.0% | F17V (TTT→GTT) | U712_11570 ← | Uncharacterized protein yqjT |
| RA | CP006881 | 2,343,788 | A→C | 27.4% | L253R (CTT→CGT) | U712_11850 ← | Farnesyl diphosphate synthase |
| RA | CP006881 | 2,376,893 | C→A | 7.9% | V351F (GTT→TTT) | U712_12075 ← | ComG operon protein 1 |
| RA | CP006881 | 2,376,922 | T→C | 5.7% | Y341C (TAT→TGT) | U712_12075 ← | ComG operon protein 1 |
| RA | CP006881 | 2,394,838 | A→C | 7.3% | K86Q (AAA→CAA) | U712_12190 → | Uncharacterized protein yqzC |
| RA | CP006881 | 2,434,458 | A→G | 5.4% | L15L (CTT→CTC) | U712_12400 ← | Uncharacterized protein yqfD |
| RA | CP006881 | 2,459,136 | A→C | 14.9% | K23N (AAA→AAC) | U712_12535 → | ComE operon protein 4 |
| RA | CP006881 | 2,523,486 | T→G | 20.0% | F79V (TTT→GTT) | U712_12950 → | Uncharacterized protein yrkO |
| RA | CP006881 | 2,529,732 | T→C | 5.5% | E122G (GAG→GGG) | U712_12985 ← | Uncharacterized protein yrkH |
| RA | CP006881 | 2,536,410 | T→A | 11.9% | D71E (GAT→GAA) | U712_13025 → | Spermine/spermidine acetyltransferase |
| RA | CP006881 | 2,672,170 | T→C | 12.1% | T82A (ACG→GCG) | U712_13760 ← | Sporulation initiation phosphotransferase B |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,861,213 | A→C | 22.7% | V248V (GTT→GTG) | U712_14765 ← | Uncharacterized protein YtxD |
| RA | CP006881 | 2,888,105 | G→T | 13.5% | T385K (ACA→AAA) | U712_14900 ← | Putative transporter ythQ |
| RA | CP006881 | 2,963,948 | G→A | 66.8% | intergenic (‑135/+145) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 3,066,215 | C→A | 5.4% | T588T (ACC→ACA) | U712_15740 → | Na(+)/H(+) antiporter subunit A |
| RA | CP006881 | 3,100,813 | A→G | 5.1% | F1566S (TTT→TCT) | U712_15925 ← | Dimodular nonribosomal peptide synthase |
| RA | CP006881 | 3,186,704 | C→A | 37.2% | E389* (GAA→TAA) | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,372,406 | T→G | 20.0% | intergenic (‑39/+1) | U712_17320 ← / ← U712_17325 | Maltodextrin transport system permease protein mdxF/Maltodextrin‑binding protein mdxE |
| RA | CP006881 | 3,476,692 | G→T | 21.5% | H19N (CAT→AAT) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
| RA | CP006881 | 3,522,897 | T→C | 5.7% | P454P (CCT→CCC) | U712_18050 → | Ribose import ATP‑binding protein RbsA |
| RA | CP006881 | 3,560,213 | G→A | 6.5% | P3P (CCG→CCA) | U712_18265 → | Putative uncharacterized protein ywpD |
| RA | CP006881 | 3,568,212 | T→A | 5.3% | F291Y (TTC→TAC) | U712_18310 → | putative MFS‑type transporter ywoG |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,603,350 | T→A | 15.6% | I152F (ATT→TTT) | U712_18545 ← | ATP synthase subunit delta |
| RA | CP006881 | 3,618,910 | A→T | 5.8% | F354Y (TTC→TAC) | U712_18655 ← | putative NAD‑dependent malic enzyme 2 |
| RA | CP006881 | 3,669,015 | A→T | 5.1% | E448V (GAA→GTA) | U712_18900 → | Penicillin‑binding protein 2D |
| RA | CP006881 | 3,689,760 | T→C | 7.6% | Y61C (TAT→TGT) | U712_19005 ← | Alanine‑anticapsin ligase BacD |
| RA | CP006881 | 3,707,932 | A→G | 5.3% | A275A (GCT→GCC) | U712_19100 ← | Spore coat polysaccharide biosynthesis protein spsC |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | 1 bp→AT | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,862,948 | A→G | 5.2% | E508G (GAG→GGG) | U712_19910 → | Urocanate hydratase |
| RA | CP006881 | 3,880,629 | A→C | 11.5% | A251A (GCT→GCG) | U712_20000 ← | Uncharacterized protein YxeI |
| RA | CP006881 | 3,929,261 | T→G | 22.4% | E191A (GAG→GCG) | U712_20255 ← | General stress protein 30 |
| RA | CP006881 | 3,938,885 | T→G | 15.9% | F503V (TTT→GTT) | U712_20290 → | NADH dehydrogenase |
| RA | CP006881 | 3,988,431 | T→G | 16.9% | A178A (GCT→GCG) | U712_20570 → | putative transporter YybO |
| RA | pSIJ663_pHT315_araE_xy | 121 | G→C | 5.6% | intergenic (–/‑2857) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 126 | G→T | 5.2% | intergenic (–/‑2852) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 6.6% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.4% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,039 | C→T | 100% | intergenic (–/‑939) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 7.1% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 9.7% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 9.9% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.0% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.4% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 5.8% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 10.3% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 8.2% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.3% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,205 | G→A | 100% | intergenic (+474/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 5.0% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,478 | G→A | 100% | intergenic (+747/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,673 | A→C | 7.0% | intergenic (+1942/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,676 | T→G | 7.3% | intergenic (+1945/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,689 | A→C | 7.8% | intergenic (+1958/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,693 | C→G | 5.1% | intergenic (+1962/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,718 | A→C | 9.1% | intergenic (+1987/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,621 | T→G | 5.5% | intergenic (+3890/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,624 | T→G | 5.3% | intergenic (+3893/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,852 | T→A | 6.2% | intergenic (+4121/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245189 | 246108 | 920 | 19 [17] | [18] 20 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067441 | 1068642 | 1202 | 19 [16] | [17] 20 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149043 | 1150707 | 1665 | 21 [18] | [18] 19 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503043 | 1504650 | 1608 | 19 [16] | [18] 20 | [U712_07735]–U712_07740 | [U712_07735],U712_07740 |
| * | * | ÷ | CP006881 | 1562267 | 1566624 | 4358 | 19 [16] | [18] 20 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 2261293 | 2262061 | 769 | 22 [15] | [18] 21 | [U712_11400] | [U712_11400] |
| * | * | ÷ | CP006881 | 3303204–3303322 | 3304612 | 1291–1409 | 19 [18] | [1] 66 | [U712_16990]–[U712_16995] | [U712_16990],[U712_16995] |
| * | * | ÷ | CP006881 | 3725697 | 3728138 | 2442 | 23 [18] | [18] 19 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757672 | 3759663 | 1992 | 19 [16] | [18] 20 | U712_19375 | U712_19375 |