Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F56 I20 R2	1958	92.1	3575798	91.1%	3257551	126.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,723,130	A→T	intergenic (‑244/‑57)	U712_19190 ← / → U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,723,130	0	A	T	100.0%	248.4 / NA	79	intergenic (‑244/‑57)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (33/46); total (33/46)

CAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GTTTTTTAGTTAAATAGTTTGATAAAACTTTTAGAC‑AAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAACAGTACGCTTTGAACAAACTAAACATATTTGTTTCTAGCAAAATCCGTT  >  CP006881/3722996‑3723265

cAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACt                                                                                                                                      <  4:407019/139‑1 (MQ=255)

   tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                                                                                   <  7:77744/139‑1 (MQ=255)

   tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                                                                                   <  6:88901/139‑1 (MQ=255)

    cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                                                                                   >  7:33837/1‑138 (MQ=255)

    cacaATCCCGCTTATTCAGATTAAGAATACGCTTTAATCATAAATCATGATAGAGTTTTCGTCAACTATTTTTTTAGTTAAATAGTATGATATAACATTTATAA‑AAAAATTCGTAAAAATTAATTGTGAAATACTTca                                                                                                                                   >  4:202416/1‑138 (MQ=255)

     acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTcaca                                                                                                                                 <  8:438884/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCCTAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  6:292283/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  1:180355/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  8:98326/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  8:392756/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  7:289737/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  3:282326/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  1:149589/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  2:344148/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTAATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  5:13056/139‑1 (MQ=255)

        aTCCCGCTTATTCAGATTAAGAATACGCGTTCATCCTAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  4:232753/139‑1 (MQ=255)

           ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                                                                            <  3:16689/138‑1 (MQ=255)

           ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                                                                                                            <  1:64552/138‑1 (MQ=255)

             gCTTATTCATATTTAGAATACTCTTTCATCATAAATCATGATATCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         <  7:40296/139‑1 (MQ=255)

             gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         <  7:261952/139‑1 (MQ=255)

             gCTTATTCAGACTAAGACTACTCATTCATCATAAATCAAGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGGATGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         <  1:300719/139‑1 (MQ=255)

              cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTTTGAAATACTTCACAATATCGTGc                                                                                                                        >  5:318097/1‑139 (MQ=255)

              cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                                                                                                        >  6:43674/1‑139 (MQ=255)

                 aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                                                                                                                       <  1:53751/137‑1 (MQ=255)

                 aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                                                                                                                       <  8:33837/137‑1 (MQ=255)

                     aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACt                                                                                                                  <  7:320852/138‑1 (MQ=255)

                       aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  6:52676/124‑1 (MQ=255)

                       aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              >  5:52676/1‑124 (MQ=255)

                       aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                                                                                                               >  2:305711/1‑139 (MQ=255)

                           agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              >  7:307529/1‑120 (MQ=255)

                           agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  8:307529/120‑1 (MQ=255)

                            gaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTTATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTTTGAAATACTTCACAATATCGTGATATACTATGCtaa                                                                                                           >  6:262930/1‑136 (MQ=255)

                                 cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  6:437980/114‑1 (MQ=255)

                                 cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              >  5:437980/1‑114 (MQ=255)

                                 cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                                                                                                      >  7:214415/1‑138 (MQ=255)

                                    tttCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              >  8:416247/1‑111 (MQ=255)

                                    tttCATCATAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  7:416247/111‑1 (MQ=255)

                                      tcatcaTAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCTTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaag                                                                                                 >  3:447120/1‑138 (MQ=255)

                                       catcatAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         <  6:109604/113‑1 (MQ=255)

                                       catcatAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         >  5:109604/1‑113 (MQ=255)

                                       catcatAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGATATACTATGCTCAATCATGaaaga                                                                                                >  6:309647/1‑138 (MQ=255)

                                        atcatAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaa                                                                                               <  5:43674/138‑1 (MQ=255)

                                            tAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              <  5:408703/103‑1 (MQ=255)

                                            tAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                                                                                                              >  6:408703/1‑103 (MQ=255)

                                            tAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAg                                                                                          >  7:85901/1‑139 (MQ=255)

                                            tAAATCATGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATAATGAATGAAAGCAg                                                                                          >  6:29332/1‑139 (MQ=255)

                                                  aTGATAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaa                                                                                       >  8:300078/1‑136 (MQ=255)

                                                     aTAGCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAAATCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGAc                                                                                  <  3:202416/138‑1 (MQ=255)

                                                        gCGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAAt                                                                               <  7:300078/138‑1 (MQ=255)

                                                         cGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         <  2:437727/95‑1 (MQ=255)

                                                         cGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         >  1:437727/1‑95 (MQ=255)

                                                         cGTTTTCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATg                                                                              >  1:67773/1‑138 (MQ=255)

                                                            tttCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         >  4:394516/1‑92 (MQ=255)

                                                            tttCGTCAACTATTTTTTTAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                                                                                                         <  3:394516/92‑1 (MQ=255)

                                                                   aactatttttttAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAg                                                                    <  6:316820/132‑1 (MQ=255)

                                                                   aactatttttttAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAg                                                                    <  1:305711/132‑1 (MQ=255)

                                                                          tttttAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACa                                                             <  8:85901/138‑1 (MQ=255)

                                                                          tttttAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACa                                                             <  1:192440/138‑1 (MQ=255)

                                                                          tttttAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACa                                                             <  2:153248/138‑1 (MQ=255)

                                                                          tttttAGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACa                                                             <  5:262930/138‑1 (MQ=255)

                                                                          tttttAGTTAAATAGTTTGATATAAAATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAACCAGGAAAAGACAATGGAAACTCAAGCATTACa                                                             <  4:244469/138‑1 (MQ=255)

                                                                               aGTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaaagg                                                        <  3:393031/138‑3 (MQ=255)

                                                                                gTTAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGtt                                                      <  6:318097/139‑1 (MQ=255)

                                                                                 ttAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTg                                                     <  5:116288/139‑1 (MQ=255)

                                                                                  tAAATAGTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTg                                                     >  7:102771/1‑138 (MQ=255)

                                                                                    aaTATTTTGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGaa                                                   <  5:218151/138‑1 (MQ=255)

                                                                                           tGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaa                                                           >  3:20911/1‑123 (MQ=255)

                                                                                           tGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACaaa                                                           <  4:20911/123‑1 (MQ=255)

                                                                                           tGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGc                                           >  3:289795/1‑139 (MQ=255)

                                                                                           tGATATAACATGTAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGc                                           >  7:104825/1‑139 (MQ=255)

                                                                                                   catgtAGACAAAAAATTCGTAAATATTAATTGTTAAATACTTAACAATATCGTGCTATACTATGCTCATTCATGAAAGAAAGCAGGAAAATACAATGGAAACTCAAGAATTACAAAAGGTTGAACAGTATTCTTTGaa                                     >  6:305662/5‑138 (MQ=255)

                                                                                                   catgtAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCTAGCATTACAAAAGGTTGAACAGTATGCTTTGaaa                                    >  5:342579/5‑137 (MQ=255)

                                                                                                   catgtAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGaaa                                    >  6:161899/5‑137 (MQ=255)

                                                                                                       tAGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAc                                >  5:240068/1‑138 (MQ=255)

                                                                                                        aGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCATTCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAca                               >  6:319706/1‑137 (MQ=255)

                                                                                                        aGAC‑AAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAca                               >  4:249303/1‑137 (MQ=255)

                                                                                                               aaaTTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACata                        >  3:224017/1‑139 (MQ=255)

                                                                                                               aaaTTCGTAAAAATTAATTGTGAAATACTTCACAATATCGAGCTAAACTATGCTCAATCATGAAAGAAAGCAGAAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACat                         >  4:300757/1‑138 (MQ=255)

                                                                                                                        aaaaTTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTc                <  8:218404/138‑1 (MQ=255)

                                                                                                                                     aaataCTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGtt  <  8:104825/139‑1 (MQ=255)

CAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GTTTTTTAGTTAAATAGTTTGATAAAACTTTTAGAC‑AAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAACAGTACGCTTTGAACAAACTAAACATATTTGTTTCTAGCAAAATCCGTT  >  CP006881/3722996‑3723265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A