Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F58 I0 R3 223 82.2 2922920 95.2% 2782619 126.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 1,951,381 A→T 21.0% A230A (GCT→GCA)  U712_09660 ← D‑alanyl‑D‑alanine carboxypeptidase dacC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,951,3810AT21.0% 95.6 / 6.9 68A230A (GCT→GCA) U712_09660D‑alanyl‑D‑alanine carboxypeptidase dacC
Reads supporting (aligned to +/- strand):  ref base A (18/34);  new base T (13/2);  total (31/37)
Fisher's exact test for biased strand distribution p-value = 7.61e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGCAGGCTCCCAGACAGAAATCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAGTCTTCGTTTGGAGACGC  >  CP006881/1951246‑1951509
                                                                                                                                       |                                                                                                                                 
ggCAGGCTCCCAGACAGTAATCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAAGCGGCAGCAGTCGTTTTAGCa                                                                                                                                <  7:115525/139‑1 (MQ=255)
ggCAGGCTCCCAGACAGAAATCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCa                                                                                                                                <  7:92087/139‑1 (MQ=255)
  cAGGCTCCCAGACAGAAATCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATc                                                                                                                              <  2:60180/139‑1 (MQ=255)
        agacagcagaAATCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCtt                                                                                                                        <  5:75667/133‑1 (MQ=255)
           agacagaAATCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTAt                                                                                                                     <  4:16838/139‑1 (MQ=255)
                 aaaTCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTTTATTCGTTCTTTATCGTta                                                                                                                >  8:157359/1‑138 (MQ=255)
                 aaaTCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTtat                                                                                                               >  6:59988/1‑139 (MQ=255)
                 aaaTCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTta                                                                                                                >  8:236928/1‑138 (MQ=255)
                   aTCCATTCCTTTGTCTTGTTTGCGTCAACAGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCAATGCTCTCTTTCGATTGTGAGGTGTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCGTTATCGttttt                                                                                                              >  6:144910/1‑135 (MQ=255)
                         tCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTTTCATCGGTCTTTATAGTtttatatgtct                                                                                                       >  6:75667/1‑134 (MQ=255)
                         tCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTTTCGTTATATAATCgg                                                                                                       >  1:190804/1‑139 (MQ=255)
                             ttGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGGATCGGTGTTTATCGTTTTATAATATGtttt                                                                                                   >  5:136607/1‑139 (MQ=255)
                              tGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTGTTTGCATGGTTAGTTTTGATTATATTATAGGttt                                                                                                    >  4:105426/1‑137 (MQ=255)
                                    gTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGga                                                                                               <  2:21765/136‑1 (MQ=255)
                                    gTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGga                                                                                               <  6:297367/136‑1 (MQ=255)
                                     tttGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATGGTTCTTTTTAGTTTTATAATCGGTTTTCGtagaga                                                                                           >  7:58799/1‑139 (MQ=255)
                                       tGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTGTTTGCATCGGTGTTTTTAGTTATTTAATCGTGTTTAGgagagt                                                                                           >  4:6793/1‑136 (MQ=255)
                                         cggcAACCGGTCCGCTCCATTCAATTTTATTCTGGTTTGGTCCAGGCTCTATTTCGTTTGTGAGGTGTTTCTCTTAACGGGCAGCAGTGGTTTTAGCATCGTTCTTTATCGTTATATAATGGGTTTTCGGAGatacccc                                                                                       <  4:224646/136‑4 (MQ=255)
                                          gTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTTGCATCGTTCTTTTTCGTTATATAATCGGTTTTCGGAGagacaga                                                                                       >  5:151226/1‑138 (MQ=255)
                                          gTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGGATCGTTGTTTATCGTTATATTATCGGGTTTCGGAGagacagcc                                                                                      >  8:28261/1‑137 (MQ=255)
                                          gTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGGATCGTGCTTTATGGTTAGATAATCGGGTTTCGGAGagccagac                                                                                      >  5:151225/1‑139 (MQ=255)
                                          gTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGagacaga                                                                                       >  7:111537/1‑138 (MQ=255)
                                          gTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGagacaga                                                                                       <  8:111537/138‑1 (MQ=255)
                                          gTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTGTTTGGAAGCTTGTTTTTGGTTATATAATACGTTTTCGGAGagacagc                                                                                       >  2:214113/1‑137 (MQ=255)
                                          gTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTGTTAGCATCGGTGTTTATCGTTATATAATCGGTTTTAGGAGagccagac                                                                                      >  8:7444/1‑139 (MQ=255)
                                                cGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCTTTATATAATCGGTTTTCGGAGAGACAGACACGGCa                                                                                <  2:190804/139‑1 (MQ=255)
                                                  gTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATGGTGTGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCAGCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAgg                                                                              <  1:265841/139‑1 (MQ=255)
                                                   tACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACGGACACGGCAGGc                                                                             <  3:151724/139‑1 (MQ=255)
                                                           cTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTcccc                                                                     <  3:129794/139‑1 (MQ=255)
                                                            ttCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTTTCATCGTTCTTTATCGTTTTATAATCGGTTTTCGGAGAGACAGCCACGGCCGGCTCTTCCCct                                                                    >  4:277862/1‑139 (MQ=255)
                                                                      aTCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTTGCATCGTTGTTTTTCGTTATATTTTGGGGTTTTGGTGAGACAGACACGGCAGGGGCTTCCCCGTGTTTTTTAt                                                          >  6:95070/1‑139 (MQ=255)
                                                                      aTCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTTGCATAGTTGTTTATAGTTATATAATAGGTTTTGGGAGAGACAGACACGGCAGGGTATTCCCCTTGTTTTTTAt                                                          >  3:306443/1‑139 (MQ=255)
                                                                      aTCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATAGTTATATTATCGGTTTTCGGAGAGACAGACACGGCAGGGTCTGCCCCTACGTTTTGAt                                                          >  7:59612/1‑139 (MQ=255)
                                                                      aTCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATAGTTCTTTATAGTTATATAATATGTTTTAGGAGAGACAGACACGGCAGGCTCTTCCCCAACATTTTGAt                                                          >  2:67892/1‑139 (MQ=255)
                                                                         gtgtTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTATCATCGTTATTTATAGTTTTATAATCGGTTTTCGGAGAGACAACCACCGCACGCGGTTACCCTTAtttttttgttt                                                       >  7:242793/1‑133 (MQ=255)
                                                                                  ccATGCTCTCTTTCTATTGTGAGGCCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCTTTATATAATCGGTTTTCGGAGAGACACACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGAcc                                               <  3:58422/138‑1 (MQ=255)
                                                                                  ccATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGAcc                                               <  7:252577/138‑1 (MQ=255)
                                                                                   cATGCTCTCTTTCGATTTTGAGGTCTTGCACTTAACCGCCAGCAGTCTTTTTAGAATCGTTCTTTAGCGTTATATAATCGGTTTGCGTAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑Tc                                            <  5:183289/139‑1 (MQ=255)
                                                                                     tGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGtttt                                                                                                   >  7:238249/1‑83 (MQ=255)
                                                                                     tGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGtttt                                                                                                   <  8:238249/83‑1 (MQ=255)
                                                                                     tGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTGTTTGCCTCGTTGTTTATGGTTTTTTAATCGGTTTTGGGTGTGACACACCCGGCCCGGGCTTGCCCGTCGTTTTGTTTTTGGGGGGAC‑Tcaa                                          >  6:199148/1‑139 (MQ=255)
                                                                                     tGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTGTTTGCCTAGGTGTTTATAGGTATATTATCGGTTTTAGGAGAGACAGACACGGCCGGCGCCTGCCCGTGGTTTTGTTTTTGGGTGGCC‑tga                                           >  4:83029/1‑136 (MQ=255)
                                                                                          tctTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGCCACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAAt                                      >  5:128591/1‑138 (MQ=255)
                                                                                              tcgctggtgCGGTCTTTCTCTCAACCGGCCGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACACACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATcac                                   <  3:6793/131‑1 (MQ=255)
                                                                                              tCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATcac                                   <  6:131252/137‑1 (MQ=255)
                                                                                              tCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATca                                    <  7:236928/136‑1 (MQ=255)
                                                                                              tCGATTGTGAGGGCTTTCTCTGAACGGGCAGCAGGCGTTTTAGCATCGTTATTAATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATcaca                                  <  7:349353/138‑1 (MQ=255)
                                                                                                 aTTTTGAGGGCTTTCTCTGAACCGGCAGCTGTCGTTTTAGCATCGTTGTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGc                              <  3:83029/139‑1 (MQ=255)
                                                                                                 aTTGTGCGTTCTTTCTCTTAACCGGCAGCAGTCGTTTTAGCATGGTTCTTTATCGTAATATAATCGGTTTTCGGAGAGACAGCCACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGc                              <  8:58799/139‑1 (MQ=255)
                                                                                                 aTTGTGCGGTCTTTCTCTCACCCGGCAGGAGTCGTTTTAGCATCGTTCTTTATGGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGGGACC‑TCAACAATCACAGTGc                              <  5:144910/139‑1 (MQ=255)
                                                                                                 aTTGTGAGGTCTTTCTCTGAACCGGCAGCTGTCGTTTTAGCATCGTTCTTTATCGTTATATAAGCGTTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGc                              <  3:72479/139‑1 (MQ=255)
                                                                                                 aTTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGACACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGc                              <  5:59988/139‑1 (MQ=255)
                                                                                                 aTTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTGTTTGCATAGTTGGTTATGTGTATATAATCGGTTTTGGGAGAGACAGAAACCGCCGGCGCTTCCCCGTGTTTTTGTTTTTGGGTGGGC‑GCAACAATCACCGTGc                              >  8:168902/1‑139 (MQ=255)
                                                                                                 aTTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTGTTAGCATCGTTCTTTTTCGTTTTATTAACGGTTTTAGGAGAGACAGACACGGGAGGCGCTTCCCCGTCTTTTTGATTTGGGGGGACCGGCAAC‑ATCACAGttc                              >  8:6944/1‑137 (MQ=255)
                                                                                                 aTTGTGAGGTCTTTCTCTCAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGc                              <  4:313719/139‑1 (MQ=255)
                                                                                                  ttGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGAATGGTTCTTTATCGTTATAAAATCGGTTTTCGGAGAGACATACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGc                              <  6:136607/138‑1 (MQ=255)
                                                                                                    gtgtgttCTTTCTCTGCACCGGCCGCAGTCGTTTTAGCATCGTTCTTTAGCTTTATATAATCGTTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCt                            <  7:157359/132‑1 (MQ=255)
                                                                                                    gtgAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTTGCATCGTTGTTTTTAGTTTTATTATCGGTTTTCGGAGAGACAGACACGGCAGGCTCGTCCCCGTCTTTTTGATTTTGGGTGACC‑TCCACAAAAAAAGTGCCTg                           >  4:146816/1‑139 (MQ=255)
                                                                                                    gtgAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCTTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCt                            <  4:306443/138‑1 (MQ=255)
                                                                                                         tgcTTTCTCTGACCCGGCAGCTGTCTTTTTTGAATCGTTTTTTTTCTTTATATATTGGTTTTTCGGAGACACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGcatca                      <  4:54375/137‑1 (MQ=255)
                                                                                                            tttCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTGTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAg                   >  3:87463/1‑139 (MQ=255)
                                                                                                            tttCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATAGTTATATAATAGGTTTTCGGAGAGACAGACACGGCCGGCTCTTCCCCTGCTTTTTGTTTTGGGGTGGCC‑TGCACAATCACAGTGGCTGcatcattg                   >  2:286983/1‑137 (MQ=255)
                                                                                                                tctGATCCGGCAGATGAAGTTTTCGAATCGTTGTTATTCGTAAATTAATGTCTTGTGGGTGAGCCTCACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAGTCt                <  2:346637/138‑1 (MQ=255)
                                                                                                                    aaCCGGCAGCTGTGGTTTTAGCTTCCTTCTTTCTGGTATTAACATCGGTTTTGGGAGAGACAGCCACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAGTCTTCGt            <  6:16836/138‑1 (MQ=255)
                                                                                                                        ggCAGCTGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAGTCTTCGTTTGga       <  7:7444/139‑1 (MQ=255)
                                                                                                                          ctgcagTCGTTTTTGAATCGTTCTTTATGGTTATATACTCGGTTTTCGGAGAGACAGCCACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAGTCTTCGTTTGgaga     <  3:73344/137‑1 (MQ=255)
                                                                                                                          cagcagTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAGTCTTCGTTTGgaga     <  1:67892/139‑1 (MQ=255)
                                                                                                                             ccgaggTTTTAGCATCGTTCTTTTTGGTAATAAAAGCGGGTTGCGGCGACACACCCACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAGTCTTCGTTTGGAGACGc  <  1:314352/134‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                 
GGCAGGCTCCCAGACAGAAATCCATTCCTTTGTCTTGTTTGCGTCAACCGGTACGCTCCCTTCAATTGTAATCGTGTTTGTTCCATGCTCTCTTTCGATTGTGAGGTCTTTCTCTGAACCGGCAGCAGTCGTTTTAGCATCGTTCTTTATCGTTATATAATCGGTTTTCGGAGAGACAGACACGGCAGGCTCTTCCCCTTCTTTTTGATTTGGGGTGACC‑TCAACAATCACAGTGCCTGCATCATAGTCTTCGTTTGGAGACGC  >  CP006881/1951246‑1951509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A