mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 62,485 | C→T | 6.1% | Q686* (CAG→TAG) | U712_00285 → | Transcription‑repair‑coupling factor |
| RA | CP006881 | 68,056 | T→A | 14.1% | V60V (GTT→GTA) | U712_00305 → | Uncharacterized protein yabO |
| RA | CP006881 | 95,849 | T→A | 20.1% | intergenic (+8/‑10) | U712_20935 → / → U712_20940 | tRNA‑Gly/tRNA‑Leu |
| RA | CP006881 | 125,619 | C→T | 100% | R21C (CGT→TGT) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 166,010 | T→G | 9.9% | noncoding (53/72 nt) | U712_21000 → | tRNA‑Gly |
| RA | CP006881 | 193,435 | C→T | 6.5% | G43D (GGC→GAC) | U712_00875 ← | putative N‑acetyltransferase YbbJ |
| RA | CP006881 | 199,508 | A→C | 18.6% | N336T (AAC→ACC) | U712_00905 → | Phosphoglucosamine mutase |
| RA | CP006881 | 199,549 | A→G | 5.5% | N350D (AAC→GAC) | U712_00905 → | Phosphoglucosamine mutase |
| RA | CP006881 | 224,585 | G→T | 9.0% | A118E (GCA→GAA) | U712_01035 ← | Uncharacterized protein ybdN |
| RA | CP006881 | 269,476 | T→C | 6.6% | V209A (GTG→GCG) | U712_01260 → | putative aldehyde dehydrogenase ycbD |
| RA | CP006881 | 280,043 | T→C | 7.5% | intergenic (+44/‑48) | U712_01310 → / → U712_01315 | Sensor histidine kinase ycbM/putative ABC transporter ATP‑binding protein YcbN |
| RA | CP006881 | 331,203 | T→G | 10.0% | L143R (CTG→CGG) | U712_01580 → | L‑lactate permease |
| RA | CP006881 | 388,852 | T→G | 15.9% | F373V (TTT→GTT) | U712_01810 → | Surfactin synthase subunit 2 |
| RA | CP006881 | 451,599 | Δ1 bp | 5.3% | intergenic (+2056/‑11) | U712_02060 → / → U712_02070 | Uncharacterized protein ycnL/Mannitol‑1‑phosphate 5‑dehydrogenase |
| RA | CP006881 | 483,944 | T→C | 5.4% | F79S (TTC→TCC) | U712_02265 → | C4‑dicarboxylate transport protein |
| RA | CP006881 | 485,016 | A→T | 16.6% | intergenic (+42/‑106) | U712_02265 → / → U712_02270 | C4‑dicarboxylate transport protein/UPF0118 membrane protein ydbI |
| RA | CP006881 | 571,197 | C→A | 23.1% | intergenic (‑89/+83) | U712_02810 ← / ← U712_02815 | putative transporter YdgF/Protein dinB |
| RA | CP006881 | 571,218 | G→T | 30.0% | intergenic (‑110/+62) | U712_02810 ← / ← U712_02815 | putative transporter YdgF/Protein dinB |
| RA | CP006881 | 571,230 | G→T | 22.4% | intergenic (‑122/+50) | U712_02810 ← / ← U712_02815 | putative transporter YdgF/Protein dinB |
| RA | CP006881 | 575,463 | T→C | 5.4% | N131S (AAC→AGC) | U712_02830 ← | Putative NAD(P)H nitroreductase ydgI |
| RA | CP006881 | 613,399 | T→C | 6.1% | G44G (GGT→GGC) | U712_03020 → | 60 kDa chaperonin |
| RA | CP006881 | 632,251 | C→T | 6.4% | A206V (GCG→GTG) | U712_03090 → | putative glucitol transport protein gutA |
| RA | CP006881 | 679,931 | A→G | 5.5% | L487L (CTT→CTC) | U712_03330 ← | putative membrane protein yerD |
| RA | CP006881 | 727,843 | A→G | 5.1% | K10R (AAG→AGG) | U712_03535 → | Unsaturated rhamnogalacturonyl hydrolase yesR |
| RA | CP006881 | 746,333 | T→C | 5.5% | T114T (ACT→ACC) | U712_03600 → | Putative glucosidase lplD |
| RA | CP006881 | 895,672 | T→G | 8.7% | F254V (TTT→GTT) | U712_04380 → | Uncharacterized protein yfhO |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 929,528 | G→C | 14.3% | A59G (GCG→GGG) | U712_04525 ← | putative lipoprotein ygaO |
| RA | CP006881 | 995,011 | A→G | 8.2% | K195E (AAA→GAA) | U712_04855 → | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| RA | CP006881 | 1,069,802 | C→G | 21.9% | A82G (GCG→GGG) | U712_05265 → | Putative quinone oxidoreductase YhfP |
| RA | CP006881 | 1,085,753 | T→G | 25.6% | intergenic (+38/‑143) | U712_05360 → / → U712_05365 | type I signal peptidase V/putative aromatic compound monooxygenase yhjG |
| RA | CP006881 | 1,111,634 | G→A | 6.8% | S38L (TCG→TTG) | U712_05455 ← | putative spore germination protein gerPF |
| RA | CP006881 | 1,145,357 | A→C | 6.9% | K259N (AAA→AAC) | U712_05645 → | Uncharacterized protein yitL |
| RA | CP006881 | 1,280,775 | G→A | 5.7% | L68L (CTG→CTA) | U712_06470 → | N‑acetylmuramoyl‑L‑alanine amidase XlyB |
| RA | CP006881 | 1,299,068 | G→A | 5.0% | G295S (GGC→AGC) | U712_06605 → | Phage‑like element PBSX protein xkdO |
| RA | CP006881 | 1,306,776 | T→A | 17.9% | I170I (ATT→ATA) | U712_06645 → | Phage‑like element PBSX protein xkdV |
| RA | CP006881 | 1,486,057 | G→T | 13.6% | D557Y (GAT→TAT) | U712_07625 → | Adenine deaminase |
| RA | CP006881 | 1,579,608 | C→A | 15.0% | Q102K (CAA→AAA) | U712_08135 → | Uncharacterized protein YlyA |
| RA | CP006881 | 1,620,883 | T→A | 17.0% | I468I (ATT→ATA) | U712_08330 → | Uncharacterized protein yloV |
| RA | CP006881 | 1,634,454 | T→G | 15.5% | N79T (AAC→ACC) | U712_08390 ← | Uncharacterized protein ylqB |
| RA | CP006881 | 1,644,786 | C→T | 15.7% | G44G (GGC→GGT) | U712_08460 → | Succinyl‑CoA ligase [ADP‑forming] subunit alpha |
| RA | CP006881 | 1,653,233 | A→G | 6.4% | E26G (GAA→GGA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,680 | C→T | 8.4% | A175V (GCT→GTT) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,713 | C→T | 43.0% | A186V (GCA→GTA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,749 | A→G | 6.9% | E198G (GAA→GGA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,867 | G→A | 16.0% | M237I (ATG→ATA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,890 | T→C | 19.7% | L245P (CTA→CCA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| MC JC | CP006881 | 1,662,121 | (AGCTGAAAGCC)2→1 | 100% | coding (806‑816/1464 nt) | U712_08545 → | putative flagellar hook‑length control protein |
| RA | CP006881 | 1,672,787 | G→T | 21.8% | M1M (ATG→ATT) † | U712_08615 → | Flagellar biosynthesis protein flhF |
| RA | CP006881 | 1,951,381 | A→T | 21.0% | A230A (GCT→GCA) | U712_09660 ← | D‑alanyl‑D‑alanine carboxypeptidase dacC |
| RA | CP006881 | 1,951,390 | C→G | 19.9% | K227N (AAG→AAC) | U712_09660 ← | D‑alanyl‑D‑alanine carboxypeptidase dacC |
| RA | CP006881 | 1,951,425 | A→C | 16.6% | S216A (TCT→GCT) | U712_09660 ← | D‑alanyl‑D‑alanine carboxypeptidase dacC |
| RA | CP006881 | 2,054,382 | A→C | 100% | intergenic (+60/‑41) | U712_10180 → / → U712_10185 | Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase |
| RA | CP006881 | 2,062,972 | G→T | 6.8% | H298N (CAT→AAT) | U712_10210 ← | 2‑oxoglutarate dehydrogenase E1 component |
| RA | CP006881 | 2,096,479 | C→A | 16.9% | L42F (TTG→TTT) | U712_10420 ← | putative coenzyme A transferase subunit alpha |
| RA | CP006881 | 2,131,201 | T→A | 6.4% | E921D (GAA→GAT) | U712_10660 ← | Uncharacterized protein ypbR |
| RA | CP006881 | 2,167,228 | T→A | 8.8% | T52S (ACC→TCC) | U712_10840 ← | Uncharacterized protein ypmA |
| RA | CP006881 | 2,265,171 | A→T | 5.5% | D376E (GAT→GAA) | U712_11425 ← | Phosphopentomutase |
| RA | CP006881 | 2,336,187 | T→C | 15.1% | H169R (CAT→CGT) | U712_11815 ← | Stage 0 sporulation protein A |
| RA | CP006881 | 2,355,029 | T→G | 13.6% | T151P (ACA→CCA) | U712_11925 ← | Stage III sporulation protein AA |
| RA | CP006881 | 2,445,423 | C→G | 13.8% | A127P (GCA→CCA) | U712_12460 ← | Chaperone protein DnaK |
| RA | CP006881 | 2,540,141 | G→T | 9.3% | T170T (ACG→ACT) | U712_13045 → | HTH‑type transcriptional regulator CzcR |
| RA | CP006881 | 2,543,140 | C→A | 6.0% | S95I (AGT→ATT) | U712_13060 ← | putative tautomerase yrdN |
| RA | CP006881 | 2,598,116 | T→A | 17.4% | M1M (ATG→TTG) † | U712_13370 ← | putative transporter yrhG |
| RA | CP006881 | 2,631,395 | G→T | 39.1% | Q402H (CAG→CAT) | U712_13545 → | putative AAA domain‑containing protein YrvN |
| RA | CP006881 | 2,723,173 | T→C | 7.9% | K64K (AAA→AAG) | U712_14040 ← | Uncharacterized protein ysmA |
| RA | CP006881 | 2,789,044 | G→A | 5.8% | A109V (GCA→GTA) | U712_14380 ← | Dephospho‑CoA kinase |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,871,022 | C→A | 22.4% | E61* (GAA→TAA) | U712_14805 ← | Putative tRNA‑binding protein ytpR |
| RA | CP006881 | 2,963,516 | G→T | 9.2% | Q100K (CAA→AAA) | U712_15285 ← | Manganese‑binding lipoprotein mntA |
| RA | CP006881 | 2,963,937 | G→A | 11.5% | intergenic (‑124/+156) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 3,076,970 | T→C | 6.3% | N51D (AAC→GAC) | U712_15815 ← | Uncharacterized protein yuxH |
| RA | CP006881 | 3,111,679 | C→A | 6.4% | W115C (TGG→TGT) | U712_15955 ← | putative oxidoreductase yuiH |
| RA | CP006881 | 3,184,596 | A→T | 5.6% | M63K (ATG→AAG) | U712_16390 ← | Uncharacterized protein YusI |
| RA | CP006881 | 3,186,737 | T→A | 22.3% | I378F (ATC→TTC) | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,223,085 | A→C | 20.9% | S133R (AGC→CGC) | U712_16600 → | putative oxidoreductase yvrD |
| RA | CP006881 | 3,232,856 | T→A | 6.1% | Q72L (CAG→CTG) | U712_16655 ← | Putative efflux system protein yvrP |
| RA | CP006881 | 3,296,484 | T→G | 16.3% | R261S (AGA→AGC) | U712_16965 ← | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | CP006881 | 3,299,106 | T→A | 6.1% | I44F (ATC→TTC) | U712_16975 ← | Phosphoglycerate kinase |
| RA | CP006881 | 3,309,155 | T→G | 18.3% | intergenic (‑48/+354) | U712_17015 ← / ← U712_17020 | putative amino acid permease YvbW/putative glycosylase yvbX |
| RA | CP006881 | 3,331,075 | C→A | 5.0% | T196T (ACG→ACT) | U712_17115 ← | RNA polymerase sigma‑54 factor |
| RA | CP006881 | 3,389,697 | G→A | 6.5% | Y182Y (TAC→TAT) | U712_17410 ← | UPF0042 nucleotide‑binding protein YhbJ |
| RA | CP006881 | 3,444,749 | A→C | 18.2% | S28A (TCC→GCC) | U712_17685 ← | UPF0750 membrane protein yvjA |
| RA | CP006881 | 3,476,682 | G→T | 39.6% | T22K (ACA→AAA) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
| RA | CP006881 | 3,482,782 | T→G | 16.6% | T152T (ACA→ACC) | U712_17880 ← | UDP‑N‑acetylglucosamine 2‑epimerase |
| RA | CP006881 | 3,503,555 | T→G | 14.8% | N590H (AAC→CAC) | U712_17960 ← | Beta‑N‑acetylglucosaminidase |
| RA | CP006881 | 3,527,351 | G→T | 7.3% | Q24K (CAA→AAA) | U712_18075 ← | Alpha‑acetolactate decarboxylase |
| RA | CP006881 | 3,528,697 | A→C | 28.6% | A167A (GCT→GCG) | U712_18080 ← | Acetolactate synthase |
| RA | CP006881 | 3,553,118 | T→G | 24.2% | A471A (GCT→GCG) | U712_18215 → | Uncharacterized protein ywqB |
| RA | CP006881 | 3,568,419 | T→C | 6.6% | F360S (TTC→TCC) | U712_18310 → | putative MFS‑type transporter ywoG |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,593,812 | G→A | 5.3% | T127M (ACG→ATG) | U712_18490 ← | Uncharacterized protein ywmC |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | 1 bp→AT | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,796,099 | T→G | 11.3% | K317N (AAA→AAC) | U712_19580 ← | Cytochrome d ubiquinol oxidase subunit 1 |
| RA | CP006881 | 3,855,350 | C→A | 23.2% | V332V (GTG→GTT) | U712_19875 ← | UPF0720 protein yxiD |
| RA | CP006881 | 3,905,563 | G→T | 12.9% | D86Y (GAT→TAT) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,933,998 | G→A | 5.5% | A146T (GCA→ACA) | U712_20275 → | Gluconate permease |
| RA | CP006881 | 3,967,698 | C→T | 5.1% | V222M (GTG→ATG) | U712_20460 ← | Two‑component system WalR/WalK regulatory protein WalI |
| RA | Exported | 116 | T→A | 6.0% | intergenic (–/‑2862) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 121 | G→C | 5.9% | intergenic (–/‑2857) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 131 | G→C | 8.1% | intergenic (–/‑2847) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 137 | A→C | 5.8% | intergenic (–/‑2841) | – / → eryR | –//vntifkey=4 |
| JC | Exported | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 3,729 | T→G | 6.1% | intergenic (+14/‑142) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,735 | A→T | 8.9% | intergenic (+20/‑136) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,741 | G→T | 9.5% | intergenic (+26/‑130) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,743 | A→T | 5.4% | intergenic (+28/‑128) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,749 | A→T | 5.4% | intergenic (+34/‑122) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| JC | Exported | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 4,625 | A→C | 6.0% | K252T (AAG→ACG) | ampR → | /vntifkey=4 |
| RA | Exported | 4,648 | T→A | 8.8% | Y260N (TAC→AAC) ‡ | ampR → | /vntifkey=4 |
| RA | Exported | 4,649 | A→C | 7.8% | Y260S (TAC→TCC) ‡ | ampR → | /vntifkey=4 |
| RA | Exported | 5,049 | C→T | 100% | intergenic (+318/‑839) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,173 | T→G | 6.0% | intergenic (+442/‑715) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,464 | T→G | 5.6% | intergenic (+733/‑424) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,467 | T→G | 5.0% | intergenic (+736/‑421) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 6,006 | T→G | 5.9% | V40G (GTT→GGT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,031 | A→C | 7.1% | A48A (GCA→GCC) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,256 | A→C | 5.6% | intergenic (+45/–) | lacZalpha → / – | /vntifkey=4/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245191 | 246108 | 918 | 21 [18] | [18] 21 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067437 | 1068642 | 1206 | 20 [18] | [19] 27 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149048 | 1150715 | 1668 | 21 [14] | [15] 21 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503061 | 1504650 | 1590 | 20 [19] | [17] 23 | U712_07740 | U712_07740 |
| * | * | ÷ | CP006881 | 1562263 | 1566619 | 4357 | 20 [17] | [1] 21 | [U712_08060] | [U712_08060] |
| * | * | ÷ | CP006881 | 2261289 | 2262063 | 775 | 21 [19] | [19] 22 | [U712_11400] | [U712_11400] |
| * | * | ÷ | CP006881 | 3725697 | 3728148 | 2452 | 21 [19] | [19] 20 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757683 | 3759668 | 1986 | 25 [19] | [19] 24 | U712_19375 | U712_19375 |