Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F54 I0 R2 227 88.8 3424874 95.5% 3270754 127.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 2,722,405 G→T 21.5% L25F (TTG→TTT U712_14030 → Hypothetical Protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,722,4050GT21.5% 92.0 / 8.1 64L25F (TTG→TTTU712_14030Hypothetical Protein
Reads supporting (aligned to +/- strand):  ref base G (18/29);  new base T (11/4);  total (29/35)
Fisher's exact test for biased strand distribution p-value = 3.54e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGATCGCGGCAATGTGGCGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCAAATATGGTTTCGAATGTTCCAAACAAACAG  >  CP006881/2722271‑2722539
                                                                                                                                      |                                                                                                                                      
agATCGCGGCAATGTGGCGGAGTGACTATTCAATATCCGCAACATGCGCCAAAGGTGTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTgaaga                                                                                                                                    <  5:267027/138‑1 (MQ=255)
        gCAATGTGGCGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAAt                                                                                                                                >  4:236200/1‑135 (MQ=255)
         cAATGTGGCGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAg                                                                                                                           <  6:223233/139‑1 (MQ=255)
            cgtgGCGGAGTGACTTTTCAATATCGGCCACATGCTCCAATGGGTTTGATGTCATTTGTCCTTCCCTCACTCAACGTTCTCTTACGCACAACAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATCCAAGACt                                                                                                                        <  6:256233/138‑1 (MQ=255)
                 cGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTgaaga                                                                                                                                    <  1:47796/122‑1 (MQ=255)
                 cGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTgaaga                                                                                                                                    >  2:47796/1‑122 (MQ=255)
                 cGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCg                                                                                                                      <  4:160524/136‑1 (MQ=255)
                 cGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAg                                                                                                                   <  5:213722/139‑1 (MQ=255)
                 cGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAg                                                                                                                   >  1:2292/1‑139 (MQ=255)
                 cGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGAATCGCAg                                                                                                                   <  5:186904/139‑1 (MQ=255)
                 cGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTAGGTCTTTTTTTAATCAAATGGAATACTCGCAg                                                                                                                   >  5:33746/1‑139 (MQ=255)
                 cGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGGGTCTATTTTACTTCTTTTTTGAATAAAATGCAACACTCggcg                                                                                                                   >  6:284410/1‑136 (MQ=255)
                   gAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCa                                                                                                                    <  3:324920/136‑1 (MQ=255)
                    aGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGTATCTCTTACGCACAAACGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAg                                                                                                                   <  4:282663/136‑1 (MQ=255)
                     gTGACTTTTCAATATCCGCAACATGCTCCAAAGGGTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAATTGCAAGACTCGCAg                                                                                                                   <  4:100294/135‑1 (MQ=255)
                      tGACTTTTCACTAGCCGGAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCGCTCACTCAAGGATCTCTTTCGCACAACAGGGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCATGACTCGCAGga                                                                                                                 <  4:200307/136‑1 (MQ=255)
                      tGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAg                                                                                                                   >  4:361887/1‑134 (MQ=255)
                      tGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGga                                                                                                                 <  3:236200/136‑1 (MQ=255)
                        aCTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTGTATTTTGATTGATTTTTTTATAAAATTCAAGAATAGCAGgggaga                                                                                                             >  1:210030/1‑138 (MQ=255)
                              cAATTTCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGTTCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAATAAAATGAATGACTCGCAGGAGAGAAAt                                                                                                          <  3:81764/135‑1 (MQ=255)
                                      gCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAg                                                                                              <  2:2292/139‑1 (MQ=255)
                                       cAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTTTTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACttt                                                                                                >  4:58346/1‑136 (MQ=255)
                                           aTGCTCCAAAGGTTTTTATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTGTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTc                                                                                            <  3:66802/136‑1 (MQ=255)
                                           aTGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGTATCTCTTACGCACAAAAGCGTTCCGTGGATTATTTCCTTCTTTTTTGAACAAAATGCAAGACTCGCAGGAGAGAAAAAGAGGACTTTAGTCaaa                                                                                         <  6:72262/139‑1 (MQ=255)
                                                   aaGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAacaaca                                                                                    <  4:252059/136‑1 (MQ=255)
                                                        tttGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATTCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATc                                                                                  >  4:156548/1‑133 (MQ=255)
                                                         ttGATGTCATTTGTCCTTACATAACTCAAGGATCTCATACGCAAAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTTAATAAAATGCAAGACTCGCAGGAGATAAATAGAGGACTTTAGTCAAACAACATCAAGaaa                                                                            <  6:20404/138‑1 (MQ=255)
                                                         ttGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTGTATTTTCCTTCTTTTTTGTAGAAAATGAAAGACTCGCAGGAGAGAAATAGAGGGATTTAGTCAAACAACATGAAGaaa                                                                            >  1:239801/1‑138 (MQ=255)
                                                         ttGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTTTTTTACTTCTTTTTTTAAGAAAATGCAAGACTCGCACGAGAGAAAAAGATGACTTTATTCAAAAAACATCAACaaa                                                                            >  5:20404/1‑138 (MQ=255)
                                                         ttGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGaaa                                                                            <  7:271020/138‑1 (MQ=255)
                                                         ttGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGGCGATTTTAATTCTTTTTTTTATAAAATTAAAGAATACCACGAGATCAAAAGAAGACTGTATTCAAACAACATCAATaaa                                                                            >  2:200771/1‑138 (MQ=255)
                                                               tCATTTGTCCATACCTCAATCAAGGATCTCTTACCCACAAACGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAATAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAaatt                                                                     <  5:20645/139‑1 (MQ=255)
                                                                cttttGTCCATCCGTAACTCAAGGAACTCTTACGCAAAAAAGCTTTTCTTTTCTATTTTCCTTGTTTTTTCAACAAAATGCAAGACTCGCAGGAGATAAATAGAGGACTTTAGTCAAACAACATCAAGAAATaaa                                                                        <  4:66826/133‑1 (MQ=255)
                                                                       ccATCCCTCACACACGGATCTCTAACGCACAAACGCGTTCCGTGTCTATTTTCCTTCTTTTTTTAAAAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTAt                                                             <  1:362667/139‑1 (MQ=255)
                                                                         acccccCACTCAAGCATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTATTTTTTGAATAAAATCCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAatttaattta                                                              <  3:27614/134‑1 (MQ=255)
                                                                         aTCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTATTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAatttaattta                                                              <  3:156548/136‑1 (MQ=255)
                                                                         aTCCCTCACTCAAGGATATCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTATTTTTTGTATAAAATGCAAGACTCGCAGGATAGAAATATAGGACTATAGTCAAACAACAAAAATAAATAAAatttaaatta                                                              >  3:413825/1‑136 (MQ=255)
                                                                                actcaAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTACGACTTg                                                       <  3:351933/136‑1 (MQ=255)
                                                                                actcaAGGATCTCTTACGCACAAAAGCGTTCCGTGGGTATTTTGCTTCTTTTTTTAATAAAATTCAAGACACGCAGGAGAGAAAAAGAGGACTTTTGTCAAACAAAAACAATAAATAAAATTTAATTTAATACTTgac                                                     >  2:362667/1‑136 (MQ=255)
                                                                                   caAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGcc                                                     >  4:157761/1‑135 (MQ=255)
                                                                                        aTCTCTTACGCACAAAAGCGTTCCGTGTGTTTTTTCCGTCTTTTTTGTAGAAAAATCAAGACTCGCAGGAGAGAAATAGAGGACTTTAATCAAACAAAATAAAGAAAAAAAATTTAATTTATTACTTTCCTAAGtt                                               >  4:89513/1‑136 (MQ=255)
                                                                                        aTCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTACGTCTTTTTTGAATAAAATGCAAGACACGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGtt                                               >  3:3311/1‑136 (MQ=255)
                                                                                           agacaggCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGcac                                         <  1:86487/133‑1 (MQ=255)
                                                                                            ctTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTTAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAaatt                                                                     >  6:343760/1‑110 (MQ=255)
                                                                                            ctTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGATAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCaaa                                                                                         >  1:249566/1‑90 (MQ=255)
                                                                                            ctTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCaaa                                                                                         <  2:249566/90‑1 (MQ=255)
                                                                                            ctTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTCAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAaatt                                                                     <  5:343760/110‑1 (MQ=255)
                                                                                            ctTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTATTTTTAAGAAAAATAAAAACACGCAGGAGATAAATAGAGGACTTTAGTAAAACAAACACAAGAAATAAAATATAAATTATTACTTGCCTACGTTTTGaaca                                        >  6:206122/1‑139 (MQ=255)
                                                                                            ctTACGCACAAAAGCGTTCCGTGTCTATTTTACTTCTTTTTTGAATAAAATTCAAGACACGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACAACAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGcacg                                        >  7:298786/1‑138 (MQ=255)
                                                                                             ttACGCACAAAAGCGTTCCGTGTCTATATTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTg                                            <  3:164772/134‑1 (MQ=255)
                                                                                              tACGCTCAAAAGGGTTCTGTGTCTATTTTCCTTTTTTTTTGAACAAAATGCAAGACTCGCTTGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGca                                          <  4:413825/135‑1 (MQ=255)
                                                                                               acccacaAAAGCGTTCCGGTTCTATTTTCCTTCTTTTTTTAACAAAATGCAAGACACGCAGGAGAGAAATACAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAg                                       <  1:211207/134‑1 (MQ=255)
                                                                                                cGCACTAATCCGTTCCGTTTCTTTTTTCCTTGTTTTTTGAATAAATTGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAg                                       <  3:89513/136‑1 (MQ=255)
                                                                                                cGCACAAAAGCGTTCCGTGTCTATTTTCCTTATTTTTTGAATAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCAt                                    <  8:371440/139‑1 (MQ=255)
                                                                                                 gCACAAAAGCTTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGATAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCAtt                                   <  1:200771/139‑1 (MQ=255)
                                                                                                     aaaaGCGTTCCGTGTGTATTTTACTTGTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTAAAACAACATCAAGAAAAAAAATTTAATTTATTACTTTCCTACGTTTTGcacctgac                                    >  4:78924/1‑129 (MQ=255)
                                                                                                     aaaaGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCa                                >  6:150696/1‑138 (MQ=255)
                                                                                                     aaaaGCGTTCCGTGGGGATTTTCCTTCTTTTTTTAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTGTTGTCAAACAACATCAAGAAATAAAATTTAATTTATTACTTGCCTAGGTTTTGCACAGCATTCCa                                >  6:248601/1‑138 (MQ=255)
                                                                                                       aaGCGTTCCGTGTCTATTTTCCTTCTTTTTTTAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTTGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCaaa                              >  7:371440/1‑138 (MQ=255)
                                                                                                       aaGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCaaa                              >  7:292437/1‑138 (MQ=255)
                                                                                                            ttCCGTGTCTATTTTACTTGTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGTCTTTAGTCAAACAACATAAAGAAATAAAATTTAATTTATTAATTTCCTACGTTTTGCACAGCATTACaaactttct                        >  2:86487/1‑133 (MQ=255)
                                                                                                               cGTGTGTATTTTACTTCTTTTTTTAAGAAAATTCAATACTAGCACGGGAGAAATATAGGTAGTTAGTCAAACCACAACAAGAAAAAAAATTTAATTTATGAATTGCCTACGTTTTGCACAGCATTCGAAAAATGGtttg                     >  6:327721/1‑138 (MQ=255)
                                                                                                                gtggCTATTTTACTTCTTTTTTTAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCAAATATGGtt                       >  4:133691/1‑136 (MQ=255)
                                                                                                                 tgtCTATTTTCCTTCTTTTTTTAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCAAATATGGttt                      <  3:157761/136‑1 (MQ=255)
                                                                                                                               cttTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCAAATATGGTTTCGAATGTTCcaaacaaa     >  1:192341/1‑139 (MQ=255)
                                                                                                                                  ttttGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCAAATATGGTTTCGAATGTTCcaaacaaa     <  8:292437/136‑1 (MQ=255)
                                                                                                                                   tttGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCAAATATGGTTTCGAATGTTCCAAACAAACAg  <  8:298786/138‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
TGATCGCGGCAATGTGGCGGAGTGACTTTTCAATATCCGCAACATGCTCCAAAGGTTTTGATGTCATTTGTCCATCCCTCACTCAAGGATCTCTTACGCACAAAAGCGTTCCGTGTCTATTTTCCTTCTTTTTTGAAGAAAATGCAAGACTCGCAGGAGAGAAATAGAGGACTTTAGTCAAACAACATCAAGAAATAAAATTTAATTTATGACTTGCCTACGTTTTGCACAGCATTCCAAATATGGTTTCGAATGTTCCAAACAAACAG  >  CP006881/2722271‑2722539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

N/A