mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 52,896 | T→C | 48.7% | V45A (GTT→GCT) | U712_00225 → | Protein veg |
| RA | CP006881 | 125,619 | C→T | 53.6% | R21C (CGT→TGT) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 199,196 | A→C | 11.4% | N232T (AAC→ACC) | U712_00905 → | Phosphoglucosamine mutase |
| RA | CP006881 | 238,253 | G→T | 23.8% | F27L (TTC→TTA) | U712_01105 ← | Uncharacterized protein ybfE |
| RA | CP006881 | 262,378 | T→G | 15.8% | A77A (GCA→GCC) | U712_01225 ← | Homocysteine S‑methyltransferase ybgG |
| RA | CP006881 | 322,455 | A→G | 5.1% | A60A (GCA→GCG) | U712_01540 → | Glycine betaine transport system permease protein opuAB |
| RA | CP006881 | 389,037 | T→G | 20.0% | A434A (GCT→GCG) | U712_01810 → | Surfactin synthase subunit 2 |
| RA | CP006881 | 611,747 | C→A | 13.5% | intergenic (+9/+29) | U712_03000 → / ← U712_03005 | Sec‑independent protein translocase protein tatCy/putative lipoprotein ydiK |
| RA | CP006881 | 732,264 | A→C | 13.0% | S135R (AGC→CGC) | U712_03550 → | Uncharacterized protein yesU |
| RA | CP006881 | 735,153 | T→G | 12.8% | intergenic (+23/‑44) | U712_03560 → / → U712_03565 | Rhamnogalacturonan lyase yesW/Rhamnogalacturonan lyase yesX |
| RA | CP006881 | 745,358 | T→G | 17.3% | V88G (GTT→GGT) | U712_03595 → | Protein lplC |
| RA | CP006881 | 819,985 | G→A | 5.8% | A804V (GCA→GTA) | U712_03970 ← | Trifunctional nucleotide phosphoesterase protein YfkN |
| RA | CP006881 | 883,744 | T→G | 23.0% | A79A (GCT→GCG) | U712_04295 → | putative siderophore transport system permease protein yfiZ |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 929,528 | G→C | 18.3% | A59G (GCG→GGG) | U712_04525 ← | putative lipoprotein ygaO |
| RA | CP006881 | 929,530 | A→C | 10.0% | S58S (TCT→TCG) | U712_04525 ← | putative lipoprotein ygaO |
| RA | CP006881 | 969,533 | G→T | 17.7% | D509Y (GAT→TAT) | U712_04735 → | Aerobic glycerol‑3‑phosphate dehydrogenase |
| RA | CP006881 | 979,761 | G→A | 5.1% | E361K (GAG→AAG) | U712_04785 → | Stage V sporulation protein R |
| RA | CP006881 | 986,184 | C→A | 29.7% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 999,467 | G→C | 5.3% | V294L (GTC→CTC) | U712_04880 → | UPF0053 protein yhdT |
| RA | CP006881 | 1,011,322 | T→G | 28.6% | V406G (GTT→GGT) | U712_04945 → | putative multidrug resistance ABC transporter ATP‑binding/permease protein YheH |
| RA | CP006881 | 1,041,657 | T→G | 11.4% | W150G (TGG→GGG) | U712_05120 → | Protein ecsB |
| RA | CP006881 | 1,062,399 | T→G | 12.6% | R69R (CGT→CGG) | U712_05225 → | Lipoate‑protein ligase LplJ |
| RA | CP006881 | 1,103,575 | A→C | 33.1% | K245N (AAA→AAC) | U712_05435 → | ATP‑dependent helicase/nuclease subunit A |
| RA | CP006881 | 1,105,857 | A→G | 5.5% | E1006G (GAA→GGA) | U712_05435 → | ATP‑dependent helicase/nuclease subunit A |
| RA | CP006881 | 1,178,360 | A→C | 12.9% | K28N (AAA→AAC) | U712_05850 → | Oligopeptide transport system permease protein AppB |
| RA | CP006881 | 1,367,334 | C→T | 8.2% | A273V (GCG→GTG) | U712_06995 → | putative glycosyltransferase ykoT |
| RA | CP006881 | 1,439,072 | C→A | 5.7% | A137S (GCA→TCA) | U712_07375 ← | putative MFS‑type transporter ykuC |
| RA | CP006881 | 1,474,968 | G→T | 35.1% | S88* (TCA→TAA) | U712_07575 ← | Uncharacterized protein ykoA |
| RA | CP006881 | 1,521,857 | A→C | 17.2% | F46V (TTT→GTT) | U712_07830 ← | Heme A synthase |
| RA | CP006881 | 1,552,179 | C→T | 9.9% | P81S (CCG→TCG) | U712_08010 → | UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase |
| RA | CP006881 | 1,641,683 | A→T | 6.0% | K132N (AAA→AAT) | U712_08445 → | Uncharacterized protein ylqG |
| RA | CP006881 | 1,653,439 | T→C | 7.0% | Y95H (TAT→CAT) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,713 | C→T | 17.5% | A186V (GCA→GTA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,878 | A→G | 15.9% | Y241C (TAT→TGT) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,890 | T→C | 9.4% | L245P (CTA→CCA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,658,610 | C→T | 42.5% | Q149* (CAA→TAA) | U712_08525 → | putative flagellar assembly protein fliH |
| JC | CP006881 | 1,662,121 | (AGCTGAAAGCC)2→1 | 38.4% | coding (806‑816/1464 nt) | U712_08545 → | putative flagellar hook‑length control protein |
| RA | CP006881 | 1,682,893 | G→A | 5.7% | L18L (TTG→TTA) | U712_08670 → | Uridylate kinase |
| RA | CP006881 | 1,831,004 | C→T | 6.1% | G59G (GGC→GGT) | U712_09105 → | Uncharacterized protein ymzC |
| RA | CP006881 | 1,867,312 | T→C | 5.8% | intergenic (‑41/+119) | U712_09300 ← / ← U712_09305 | Uncharacterized protein yncM/putative membrane protein ynzK |
| RA | CP006881 | 1,871,734 | A→T | 6.9% | L401F (TTA→TTT) | U712_09340 → | putative membrane protein yndD |
| RA | CP006881 | 1,941,847 | T→G | 8.0% | K219T (AAG→ACG) | U712_09650 ← | Plipastatin synthase subunit B |
| RA | CP006881 | 1,951,425 | A→C | 17.0% | S216A (TCT→GCT) | U712_09660 ← | D‑alanyl‑D‑alanine carboxypeptidase dacC |
| RA | CP006881 | 2,035,143 | C→T | 6.1% | K42K (AAG→AAA) | U712_10055 ← | Putative transcriptional regulator protein yobU |
| RA | CP006881 | 2,054,382 | A→C | 100% | intergenic (+60/‑41) | U712_10180 → / → U712_10185 | Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase |
| RA | CP006881 | 2,071,597 | C→A | 17.0% | intergenic (‑224/‑51) | U712_10240 ← / → U712_10245 | Uncharacterized protein yojJ/putative multidrug resistance protein norM |
| RA | CP006881 | 2,071,605 | G→T | 23.4% | intergenic (‑232/‑43) | U712_10240 ← / → U712_10245 | Uncharacterized protein yojJ/putative multidrug resistance protein norM |
| RA | CP006881 | 2,194,442 | A→C | 5.7% | S280S (TCT→TCG) | U712_10995 ← | Anthranilate synthase component 1 |
| RA | CP006881 | 2,194,466 | C→T | 6.7% | R272R (CGG→CGA) | U712_10995 ← | Anthranilate synthase component 1 |
| RA | CP006881 | 2,194,481 | G→A | 5.6% | A267A (GCC→GCT) | U712_10995 ← | Anthranilate synthase component 1 |
| RA | CP006881 | 2,215,176 | C→A | 6.0% | R122L (CGC→CTC) | U712_11120 ← | Uncharacterized protein YpfA |
| RA | CP006881 | 2,230,240 | T→C | 7.4% | I429I (ATT→ATC) | U712_11200 → | D‑3‑phosphoglycerate dehydrogenase |
| RA | CP006881 | 2,260,497 | A→C | 15.9% | G22G (GGT→GGG) | U712_11390 ← | Stage V sporulation protein AB |
| RA | CP006881 | 2,309,123 | G→A | 12.5% | H14Y (CAC→TAC) | U712_11675 ← | Arginine transport ATP‑binding protein ArtM |
| RA | CP006881 | 2,336,187 | T→C | 7.1% | H169R (CAT→CGT) | U712_11815 ← | Stage 0 sporulation protein A |
| RA | CP006881 | 2,420,086 | Δ1 bp | 6.8% | coding (1108/1812 nt) | U712_12325 ← | DNA primase |
| RA | CP006881 | 2,631,395 | G→T | 13.3% | Q402H (CAG→CAT) | U712_13545 → | putative AAA domain‑containing protein YrvN |
| RA | CP006881 | 2,643,663 | T→C | 8.5% | intergenic (‑30/+37) | U712_13595 ← / ← U712_13600 | Single‑stranded‑DNA‑specific exonuclease recJ/Uncharacterized protein yrvD |
| RA | CP006881 | 2,648,594 | T→A | 5.6% | L393I (TTA→ATA) | U712_13620 → | Stage V sporulation protein B |
| RA | CP006881 | 2,722,405 | G→T | 21.5% | L25F (TTG→TTT) | U712_14030 → | Hypothetical Protein |
| RA | CP006881 | 2,722,408 | G→T | 21.1% | K26N (AAG→AAT) | U712_14030 → | Hypothetical Protein |
| RA | CP006881 | 2,791,503 | A→G | 5.7% | S726P (TCA→CCA) | U712_14395 ← | DNA polymerase I |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,871,911 | A→T | 15.5% | T39T (ACT→ACA) | U712_14810 ← | UPF0354 protein ytpQ |
| RA | CP006881 | 2,991,169 | A→T | 53.9% | intergenic (‑5/+13) | U712_21340 ← / ← U712_21345 | tRNA‑Leu/tRNA‑Gly |
| RA | CP006881 | 3,008,855 | C→T | 5.3% | D228N (GAT→AAT) | U712_15460 ← | Exo‑glucosaminidase lytG |
| RA | CP006881 | 3,028,094 | C→T | 7.8% | R10K (AGA→AAA) | U712_15535 ← | Methyl‑accepting chemotaxis protein tlpA |
| RA | CP006881 | 3,109,057 | C→T | 6.8% | V95M (GTG→ATG) | U712_15940 ← | Isochorismate synthase dhbC |
| RA | CP006881 | 3,112,406 | T→G | 12.1% | F95V (TTT→GTT) | U712_15960 → | Putative biotin transporter BioYB |
| RA | CP006881 | 3,118,648 | T→G | 25.1% | K167T (AAA→ACA) | U712_15995 ← | NADH dehydrogenase‑like protein yumB |
| RA | CP006881 | 3,129,062 | T→G | 13.2% | K510T (AAG→ACG) | U712_16065 ← | putative peptidase yuxL |
| RA | CP006881 | 3,146,831 | A→C | 11.3% | K72N (AAA→AAC) | U712_16165 → | Purine catabolism regulatory protein |
| RA | CP006881 | 3,299,347 | A→G | 6.4% | intergenic (‑112/+205) | U712_16975 ← / ← U712_16980 | Phosphoglycerate kinase/Glyceraldehyde‑3‑phosphate dehydrogenase 1 |
| RA | CP006881 | 3,309,168 | C→A | 27.5% | intergenic (‑61/+341) | U712_17015 ← / ← U712_17020 | putative amino acid permease YvbW/putative glycosylase yvbX |
| RA | CP006881 | 3,321,905 | G→A | 6.1% | L344L (CTG→TTG) | U712_17080 ← | Beta‑galactosidase ganA |
| RA | CP006881 | 3,444,703 | A→C | 16.1% | V43G (GTC→GGC) | U712_17685 ← | UPF0750 membrane protein yvjA |
| RA | CP006881 | 3,444,743 | T→A | 20.7% | N30Y (AAT→TAT) | U712_17685 ← | UPF0750 membrane protein yvjA |
| RA | CP006881 | 3,446,121 | A→C | 16.2% | intergenic (‑145/+43) | U712_17690 ← / ← U712_17695 | Peptide chain release factor 2/Protein translocase subunit secA |
| RA | CP006881 | 3,476,692 | G→T | 31.6% | H19N (CAT→AAT) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
| RA | CP006881 | 3,498,468 | T→C | 7.1% | T119T (ACA→ACG) | U712_17940 ← | Glycerol‑3‑phosphate cytidylyltransferase |
| RA | CP006881 | 3,568,905 | G→T | 17.9% | T389K (ACA→AAA) | U712_18315 ← | Uncharacterized protein ywoF |
| RA | CP006881 | 3,573,745 | C→T | 6.2% | intergenic (‑31/+153) | U712_18330 ← / ← U712_18335 | putative isochorismatase family protein ywoC/Uncharacterized protein ywoB |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,615,482 | C→A | 28.5% | E177* (GAA→TAA) | U712_18635 ← | Peptide chain release factor 1 |
| RA | CP006881 | 3,647,948 | G→A | 5.2% | intergenic (‑349/+48) | U712_18790 ← / ← U712_18795 | Nitrate reductase alpha chain/putative transcription regulator ArfM |
| RA | CP006881 | 3,647,985 | A→C | 11.6% | intergenic (‑386/+11) | U712_18790 ← / ← U712_18795 | Nitrate reductase alpha chain/putative transcription regulator ArfM |
| RA | CP006881 | 3,701,817 | A→G | 5.5% | intergenic (‑1307/+330) | U712_19060 ← / ← U712_19070 | Uncharacterized protein yweA/Spore coat polysaccharide biosynthesis protein spsJ |
| RA | CP006881 | 3,718,298 | C→A | 5.3% | G16W (GGG→TGG) | U712_19165 ← | Uncharacterized protein ywdD |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | 1 bp→AT | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,232 | A→C | 23.2% | intergenic (‑64/‑465) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,827,109 | G→A | 5.8% | P316L (CCG→CTG) | U712_19740 ← | Catalase‑2 |
| RA | CP006881 | 3,835,011 | T→A | 7.3% | I90F (ATC→TTC) | U712_19780 ← | ATP‑dependent RNA helicase dbpA |
| RA | CP006881 | 3,905,563 | G→T | 19.9% | D86Y (GAT→TAT) | U712_20135 → | Uncharacterized protein yxcD |
| RA | Exported | 116 | T→A | 5.1% | intergenic (–/‑2862) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 121 | G→C | 5.8% | intergenic (–/‑2857) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 131 | G→C | 7.4% | intergenic (–/‑2847) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 137 | A→C | 5.1% | intergenic (–/‑2841) | – / → eryR | –//vntifkey=4 |
| JC | Exported | 2,210 | +TCTCG | 11.3% | intergenic (–/‑768) | – / → eryR | –//vntifkey=4 |
| JC | Exported | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 3,729 | T→G | 7.0% | intergenic (+14/‑142) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,735 | A→T | 9.6% | intergenic (+20/‑136) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,741 | G→T | 9.9% | intergenic (+26/‑130) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,743 | A→T | 5.5% | intergenic (+28/‑128) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,749 | A→T | 5.6% | intergenic (+34/‑122) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,750 | C→A | 5.1% | intergenic (+35/‑121) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,783 | G→T | 5.7% | intergenic (+68/‑88) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| JC | Exported | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 4,625 | A→C | 6.8% | K252T (AAG→ACG) | ampR → | /vntifkey=4 |
| RA | Exported | 4,642 | G→T | 5.3% | V258F (GTT→TTT) | ampR → | /vntifkey=4 |
| RA | Exported | 4,648 | T→A | 10.9% | Y260N (TAC→AAC) ‡ | ampR → | /vntifkey=4 |
| RA | Exported | 4,649 | A→C | 8.4% | Y260S (TAC→TCC) ‡ | ampR → | /vntifkey=4 |
| RA | Exported | 5,049 | C→T | 100% | intergenic (+318/‑839) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,173 | T→G | 7.2% | intergenic (+442/‑715) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,302 | A→C | 5.2% | intergenic (+571/‑586) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,464 | T→G | 5.2% | intergenic (+733/‑424) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 6,006 | T→G | 6.9% | V40G (GTT→GGT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,012 | A→C | 7.0% | Q42P (CAA→CCA) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,031 | A→C | 6.8% | A48A (GCA→GCC) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,033 | A→C | 5.0% | H49P (CAT→CCT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,047 | A→C | 5.5% | S54R (AGC→CGC) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,256 | A→C | 5.8% | intergenic (+45/–) | lacZalpha → / – | /vntifkey=4/– |
| RA | Exported | 6,277 | A→C | 5.6% | intergenic (+66/–) | lacZalpha → / – | /vntifkey=4/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245165 | 246109 | 945 | 22 [20] | [20] 22 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067440 | 1068645 | 1206 | 21 [20] | [20] 21 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149048 | 1150722 | 1675 | 27 [16] | [19] 21 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503049 | 1504679 | 1631 | 24 [19] | [20] 23 | [U712_07735]–U712_07740 | [U712_07735],U712_07740 |
| * | * | ÷ | CP006881 | 1562263 | 1566637 | 4375 | 21 [17] | [18] 22 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 2261285 | 2262065 | 781 | 23 [20] | [20] 21 | U712_11400 | U712_11400 |
| * | * | ÷ | CP006881 | 3725699 | 3728135 | 2437 | 24 [14] | [17] 25 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757680 | 3759659 | 1980 | 21 [17] | [20] 21 | U712_19375 | U712_19375 |