Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F54 I0 R2 227 88.8 3424874 95.5% 3270754 127.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,309,168 C→A 27.5% intergenic (‑61/+341) U712_17015 ← / ← U712_17020 putative amino acid permease YvbW/putative glycosylase yvbX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,309,1680CA27.5% 69.0 / 7.9 70intergenic (‑61/+341)U712_17015/U712_17020putative amino acid permease YvbW/putative glycosylase yvbX
Reads supporting (aligned to +/- strand):  ref base C (23/26);  new base A (5/15);  total (28/42)
Fisher's exact test for biased strand distribution p-value = 1.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCTCCGCCCAGCGCCATCATCATAATATGGCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTATTCCGTTCCGT  >  CP006881/3309034‑3309305
                                                                                                                                        |                                                                                                                                          
gCTCCGCCCAGCGACATAATTATAATTTGGCGTGACGTCTTCGTGGTTTTTAACGTTTGATTGTCGTTTTTCTTCATCTTCTACCTATCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACctaatc                                                                                                                                            <  4:102873/135‑1 (MQ=255)
    cGCCCAGCGCCATCATCATAATATGGCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCATACCTAATCTAATata                                                                                                                                     >  8:73797/1‑136 (MQ=255)
           cgcCATCATCATAATATGGCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATGCTCTTCAACCTGTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGGAGCCTACCAAATCTAATACTTAAAgag‑a                                                                                                                            >  5:151821/1‑139 (MQ=255)
                   tcatAATATGGCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATGCGCTTGTACCTGTCCTTGTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCCGCGCCGACCGAAGATAATATATAAACAg‑accaac                                                                                                                       >  4:287405/1‑132 (MQ=255)
                     ataataTGGCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGGCTCCTACCTAATCTAATAGATAAATAG‑ACGACGAGCCt                                                                                                                  >  8:118650/1‑139 (MQ=255)
                           tGGCGGGACGCCATCGGGCGTTTTAAGTTTTGATTGTCTTTTTTCATCCTCTTCTCCCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGAAAAAGAC‑ACGACGAGCCTTCg                                                                                                               <  3:189789/136‑1 (MQ=255)
                            ggggggCCGTCATCGGGCTTTTTATCGTTTGATTGTGGTTTTTCAGCCTCTTCTACCTCTCCTTCT‑GTTTTAAAAAAAAAAAAACCCCC‑GCCGTCTCCTACAAAATCTAATATAAAAAGCG‑ACGACGAGCCTTCg                                                                                                               <  4:52593/132‑1 (MQ=255)
                            ggCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATGCTCTTCTACCTGTCCGTCGCCTTTTCAAAAACAAAAAA‑GCCC‑CCCGACGGCTACCTAAACTAATAGATTAATAG‑ACGACGAACCCTCggggg                                                                                                           >  2:222842/1‑136 (MQ=255)
                            ggCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGCC‑ACGACGAGCCTTCGGCt                                                                                                            <  5:168338/138‑1 (MQ=255)
                             gCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGGTTTCAAAAACAAAAAA‑GCCC‑GCCGTCGCCTACCTAATCTAATATATAAATAG‑ACGACGAGCCGTCGGcggc                                                                                                          >  2:342076/1‑136 (MQ=255)
                              cGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTGATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCGCCTACCGTCTCTAATAGATAAAGAG‑ACGACGAGCCTTCGGcgggc                                                                                                         >  6:399528/1‑135 (MQ=255)
                              cGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTTCCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTGGCCTACCTAATCTAATAGAAAAATCT‑AAGACGAGCCATCCGCGGAc                                                                                                         >  2:291482/1‑139 (MQ=255)
                              cGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGACCCTTCGGCTgcc                                                                                                         >  7:258162/1‑137 (MQ=255)
                              cGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATATAATAGATAAAGAG‑ACGACGAGACTTCGGCTgcc                                                                                                         >  1:249300/1‑137 (MQ=255)
                              cGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCAAATATAATATATTAATAG‑ACGAAGAGCCTTCGGCTGAc                                                                                                         >  6:139896/1‑139 (MQ=255)
                              cGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCGACCTAATCTAATAGATAAAGAG‑ACGACGACCCTTCGGCTGAc                                                                                                         >  2:26674/1‑139 (MQ=255)
                                gcaCGTCAGCGTGCGTTTTAACGTTTGATTGGCGTTTTTCATCCTCTTCAACCTCACCTACTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCCCCTACCAAATCTAATACATAAAGCG‑ACGACGAGCCTTCGGCTGACcg                                                                                                       <  5:177575/137‑1 (MQ=255)
                                 gACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTAATCCTCTTCTACCTCTCCTTCTCGTTTTGAAAAACAAAAAA‑GCCC‑CCCCTCGCCGACCTAATCTAATATATAAAGAG‑ACGACGAGCCGTCGGCTgcc                                                                                                         >  3:123690/1‑134 (MQ=255)
                                   cGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCGACCTAATCTAATAGATAAAGAG‑ACGACGACCCTTCGGCTGACcg                                                                                                       >  4:136782/1‑136 (MQ=255)
                                    gTCAGCGGGCGTTTTAACGTTGTATTGTCGTTTTTCAACCCCTTATACCTCTCCTACTCTTTTACAAAAACAAAAAC‑CCCC‑GCCGGCTCATACATAATAAAAAAGATAAAGCC‑ACGACGAGCCTTCGGCTGACCGCGGt                                                                                                   <  8:98912/139‑1 (MQ=255)
                                     tCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTGATCCTCTTCTACCTCTCCTTGTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCGCCTGCCTAATCGAAAATATAAATAG‑ACGACCAGCCTTCGGCGGCCCGCgggc                                                                                                  >  2:313507/1‑137 (MQ=255)
                                      cATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAC‑GCCC‑GCCGTCTCCTACCAAATCTAATAGATAAAGCG‑ACGACGAGCCTTCGGCTGACCGCgg                                                                                                    <  3:308882/136‑1 (MQ=255)
                                      cATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCg                                                                                                               >  4:419443/1‑125 (MQ=255)
                                      cATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATACATAAAGAG‑ACGACGAGCCTTCg                                                                                                               <  3:419443/125‑1 (MQ=255)
                                       aTCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGGTTTCAAAAAAAAAAAA‑GCCC‑GCCGTGGCCGACCTAATCTAATAGATAAAGAG‑ACGACGCGCCATCGGCGGCCCCCGGGAcc                                                                                                >  7:384090/1‑139 (MQ=255)
                                        tCGTGCGTTTTACCGTTTGATGGGCGTTTTTCACCAGCACCACCCTCTCCTTCTCGTTTAAAAAAACAAAAAC‑CCCC‑GCCGGCACCTACCTAATATAATAGAAAACCCC‑ACGACGAGCCTTCGGCTGACCGCGGTACCa                                                                                               <  2:42098/139‑1 (MQ=255)
                                          gTGCGTTTTACCGTTTGATTGTCGTTTTTCATCCTATTATCCAGCTCCTTCTCGTTTTCAAAAACAAAAAC‑GCCC‑GCCGGCTCCTACCTAATCTAATACATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCa                                                                                               <  7:126656/137‑1 (MQ=255)
                                          gTGCGTTTTAAGGTTTGATTGTCGTTTTTCATCCTCTTCAACCTCTCCTTCTCGTTTTCAAAAACAAAAAC‑GCCC‑GCCGTCTCCTACCTAATCTAATAGAAAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTAcc                                                                                                <  3:138076/136‑1 (MQ=255)
                                          gTGCGTTTTAACGTTTGATTGTCTTTTTTCATCCTCTTCTCCCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACATAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCAct                                                                                             <  5:218164/139‑1 (MQ=255)
                                                 ttAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTGCTCGTTTTCAAAAACAAAAAC‑GCCC‑GCCGTCTCCTACCTAATCAAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCttgtt                                                                                       <  8:20473/138‑1 (MQ=255)
                                                         tGATTGTCGTTTTTCATCCTCATCTACCTCTCCGTCTCGGTTTCAAAAAAAAAAAA‑GCCC‑CCCGTGGACTACCAAAAAAAAAATAAAAAGAA‑ACCACCACCCTTCGGCTTACCCCCGTTCCACGCATGTTTAttaata                                                                               >  6:187847/1‑134 (MQ=255)
                                                         tGATTGGCGTTTTACATCATCTTCTACGTCACGTTCTCGTTTTCAAAAACAAAAAA‑CCCC‑GCCGTCTCATACCAAATCAAATACATAAAGCG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGAttcttc                                                                               <  8:316088/138‑1 (MQ=255)
                                                          gATTGTCGTTTTTCATCCTCTTCTACCGCTCCTTCTCGGTTTGAAAAAAAAAAAA‑GCCC‑CCCGTCACCGAACTAATATAATAGATAAATAG‑ACGACGCGCCATGGGCTGACCGCGGTACCCCTCTTTTTGGTTGTTGAt                                                                             >  2:351274/1‑139 (MQ=255)
                                                              ttCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATATAATATATAAAGCG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATgaa                                                                          <  1:26674/137‑1 (MQ=255)
                                                                    ttccATCCTCTTCTACCTCCCCTTCTCGTTTACAAAAAAAAAAAC‑CCCC‑GCCGTCTCCTACCTAATCAAAAAGAAAAAGCG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATcc                                                                    <  1:277586/135‑1 (MQ=255)
                                                                          ccTCTTATCCCTCTCTTTCTCTTTTACAAAAAAAAAAAC‑GCCC‑GCCGTCTCATACATAATATAATAGATAAAGCG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCtttt                                                             <  7:208221/139‑1 (MQ=255)
                                                                                ctACCTCTCCTTCTCGTTTTCAAAACCAAACAC‑GCCC‑GCCGTCTCCAACCAAATCTAATAGAAAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGAcc                                                         <  8:93355/137‑1 (MQ=255)
                                                                                caaCCTCTCCTT‑AGGTTTTAAAAAAAAAAAAA‑CCCCGGGCGGCTCATACAAAAGATAATTGAAAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGAc                                                          <  5:104486/134‑1 (MQ=255)
                                                                                atcccTCTCGTTCTCGTTTAAAAAAAAAAAAAG‑CCCC‑GCCGTCTCCTACTTAATCAAATATATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGAc                                                          <  8:259726/133‑1 (MQ=255)
                                                                                      ctcCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACCAGCCTTCGGCTGACCGCGGTACCACGCTTGTTTATTCTTGATGAAGAATCCTGCTTTTTACCTGTAACg                                                  >  8:334319/1‑138 (MQ=255)
                                                                                       tcattCTCGTAATCAAAAACAAAAAC‑GCCC‑CCCGACTCATAACTAATTTAATACAAAACGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACg                                                  <  2:392113/134‑1 (MQ=255)
                                                                                        cgttCTCTTTTACAAAAACAAAAAA‑GCCC‑GCCGTCACCTACCAAATCTAATAGAAAAAGCG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAg                                               <  1:43453/137‑1 (MQ=255)
                                                                                        ccTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGCCCGCGGTACCACTCTTGTTGATTGTTCATGAAGAATCCTGCGTTTGACCTGTAACGTAg                                               >  8:218764/1‑139 (MQ=255)
                                                                                        ccTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCAAATCTAATAGATAAATAG‑ACGACGCGCCAACGGCTCACCCCGCTACACCACTAGTTTATTCTTAATGAATAAACGGGCTATTGAGCAGTaaaca                                                 >  1:403272/1‑134 (MQ=255)
                                                                                         cTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAAACTAATAGATAAAGAC‑ACCACGAGCCATCGGCTGACCGCGGAACCACTCTTGTTGATACTTAATGAAGAATCCAGCTTTTGACCAGTAACg                                                  >  4:123446/1‑135 (MQ=255)
                                                                                           tctcGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTACTACCTAATCTAATAGATAAAGAG‑ACTACCAGCCATCGGCTGACAGCGGTAACCCGCTTGTTTATTCTTGATGAATAAAACAGGTTTTGAACAGTTACGAAGGtt                                            >  2:287153/1‑139 (MQ=255)
                                                                                            ctcGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGGACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGAGCTGTAACGAAggg                                             >  6:403318/1‑136 (MQ=255)
                                                                                                ttttCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCg                                       <  8:328810/139‑1 (MQ=255)
                                                                                                 tttCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCATCGGCGGACCGCGGGACCCCACTTGTTGTATCTTGATGAAGAAACCGGCTTTTTACCAGTAACGAAGGGTAGCCGt                                      >  5:65975/1‑139 (MQ=255)
                                                                                                   tCAAAAAAAAAAAA‑GCCC‑GCCGTATCCTACATAATATAATAGATAACGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGtt                                     <  2:262413/138‑1 (MQ=255)
                                                                                                   aaaaaaaaaaaacC‑CCCC‑GCCGTCACCAACCTAATAAAATAGAAAAAGCC‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGtt                                     <  1:342076/136‑1 (MQ=255)
                                                                                                    aaaaaacaaaacC‑CCCC‑GCCGTCTCCTAACTAATAAAATATAAACACCC‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGt                                      <  4:259267/135‑1 (MQ=255)
                                                                                                         acaaaaaA‑CCCC‑GCCGTCTCCAACCTAATCAAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACAt                              <  8:294575/139‑1 (MQ=255)
                                                                                                          caaaaaA‑GCCC‑GCCGGCTCCTACCTAATCTAATAGATAAAGAGCACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACAt                              <  2:249300/139‑1 (MQ=255)
                                                                                                            aaaat‑GCCC‑GAGTTCTCTTAAATAATATAAATGAAAATGAG‑AAGACGAGCCTTCGGCTGACCGCGGTAACACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAgt                           <  8:291529/139‑2 (MQ=255)
                                                                                                              caa‑GCCC‑CCCGTCTCATCCCTAATCTAATATATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGa                         <  1:313507/138‑1 (MQ=255)
                                                                                                               accgCCC‑GCCGTCTCCAACATAATCTATTAGATAAAGAG‑ACGACCAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGa                         <  7:334319/136‑1 (MQ=255)
                                                                                                               acccccc‑GCCGTCACCTACATAATATAATATATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGa                         <  1:291482/135‑1 (MQ=255)
                                                                                                               aacgCCC‑GCCGTCTCCTACCTAATATAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGa                         <  1:93622/136‑1 (MQ=255)
                                                                                                                   ccc‑GCCGTCTCCTACATAATAAAATACATAAAGAC‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGaa                        <  3:136782/136‑1 (MQ=255)
                                                                                                                   ccc‑GCCGTACCCTACCTATTCTAAATAACACAGAG‑AAGACGAGCCTTCGGCGGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTTCCCTGTAACGAAGGTTAGCCGTTAAAACATAGGTAatat                     <  8:120611/139‑1 (MQ=255)
                                                                                                                   ccc‑GCCGGCTCCTACCTAATCTAATACAAAAACAC‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGaa                        <  4:396917/136‑1 (MQ=255)
                                                                                                                     cggccgTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGTCCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGAGCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATAtt                    <  5:187847/137‑1 (MQ=255)
                                                                                                                     c‑gccgTCTCCTACCTAATCTAATAGATAACGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAata                      <  4:123690/136‑1 (MQ=255)
                                                                                                                       gccgTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTTATTCTTAATGAAGAATACTGCTTTTGTCCTGTAACGAAGGTTAGCCGTTAAAAAATATGGAATATTc                   >  2:202677/1‑138 (MQ=255)
                                                                                                                         cgTCTCCTACCTAATATATTAATTAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTc                   <  3:118817/136‑1 (MQ=255)
                                                                                                                          gTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTAATGAAGAAACCGGGTTTTGACCTCTAACGACTGTTAGCAGTTAAAACATAAGGAATAtta                   >  4:118817/1‑134 (MQ=255)
                                                                                                                              cctacctaATATAATTAATAACCCC‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTAtt           <  5:357114/139‑1 (MQ=255)
                                                                                                                              cctacataATCTAATACATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTAtt           <  5:306146/139‑1 (MQ=255)
                                                                                                                               ctacctaATATAATATAAAAAGCG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTAt            <  7:93493/137‑1 (MQ=255)
                                                                                                                                 acctaATCTAAAACATAAACAC‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTAtt           <  3:287405/136‑1 (MQ=255)
                                                                                                                                   ctaatctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTAttccgtt      <  5:139896/139‑1 (MQ=255)
                                                                                                                                   ctaatataatACAAAAAGAG‑ACGACGAGCCTTCGGCTGACCGTGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTAttccgtt      <  8:332442/139‑1 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATcc                                                                    >  7:293852/1‑73 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATcc                                                                    <  8:293852/73‑1 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAatat                     <  7:195249/120‑1 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAatat                     >  8:195249/1‑120 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTATtccgttccgt  >  2:156080/1‑139 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTATtccgttccgt  >  8:226948/1‑139 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTATtccgttccgt  >  1:423412/1‑139 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGACGTTAAAACATAGGGAATATTAAATCTAttccgttactt  >  7:189750/1‑135 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCCTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTATtccgttccgt  >  6:140120/1‑139 (MQ=255)
                                                                                                                                       tctaatAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGGACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTAttccgttccg   >  2:314171/1‑138 (MQ=255)
                                                                                                                                        |                                                                                                                                          
GCTCCGCCCAGCGCCATCATCATAATATGGCGGGACGTCATCGTGCGTTTTAACGTTTGATTGTCGTTTTTCATCCTCTTCTACCTCTCCTTCTCGTTTTCAAAAACAAAAAA‑GCCC‑GCCGTCTCCTACCTAATCTAATAGATAAAGAG‑ACGACGAGCCTTCGGCTGACCGCGGTACCACTCTTGTTGATTCTTCATGAAGAATCCTGCTTTTGACCTGTAACGAAGGTTAGCCGTTAAAACATAGGGAATATTCAATCTATTCCGTTCCGT  >  CP006881/3309034‑3309305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A