Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F56 I13 R1
|
121 |
87.9 |
3230772 |
95.5% |
3085387 |
127.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
2,963,941 |
A→G |
intergenic (‑128/+152) |
U712_15285 ← / ← U712_15290 |
Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 2,963,941 | 0 | A | G | 97.4%
| 135.0
/ ‑4.1
| 40 | intergenic (‑128/+152) | U712_15285/U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (31/7); total (32/8) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
GTCTCATATTTCTCCTCCTCTTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAAATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCATTTA > CP006881/2963807‑2964067
|
gTCTCATATTTCTCCTCCTCTTTGCCATCAATGTCCGATTTTTTTATCTTATGTTGACAGTTCTTAGACATGTGACATTAAATTAGACAAAAGCATGTTTTATTTACACAGGACAAAAAGATTCCATCATGCAAGAta > 5:245091/1‑137 (MQ=255)
ctcctcTTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGc < 4:189517/136‑1 (MQ=255)
ctctTTGACATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTATTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCAtttt > 1:222284/1‑139 (MQ=255)
ccATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAg > 8:322114/1‑139 (MQ=255)
ttATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAAc > 6:179519/1‑139 (MQ=255)
tCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGGGTTTGGCCTTTTTTGTCAAGCTTATTTACATAAAAAAACCg < 4:88340/138‑1 (MQ=255)
aTGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGc < 7:322114/136‑1 (MQ=255)
aTGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCt < 7:132744/137‑1 (MQ=255)
tCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTcag > 1:362569/1‑138 (MQ=255)
tCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTcag > 5:253090/1‑138 (MQ=255)
tCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTcag > 7:174296/1‑138 (MQ=255)
ttCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGcc > 3:93558/1‑139 (MQ=255)
aGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTca < 8:334627/128‑1 (MQ=255)
aGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTca > 7:334627/1‑128 (MQ=255)
tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCGATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACg > 7:327758/1‑139 (MQ=255)
tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCaacc > 8:80903/1‑136 (MQ=255)
tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 5:343528/1‑138 (MQ=255)
tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 6:156378/1‑138 (MQ=255)
tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 6:267248/1‑138 (MQ=255)
tgtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 6:339982/1‑138 (MQ=255)
gtgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 6:37989/1‑137 (MQ=255)
ttaCAATAAATTAGCCAAAAGCATGTTTTATTTACAAAGGACAAAAAGATTCAATCATGCAAGAATATCTCGATAGTACATATTTGTCAAGCTGATTTACATAAAAAAACATTCTGGTTCAGCAGCCTGTCAAAAc > 4:347802/3‑136 (MQ=255)
tgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGt > 2:105270/1‑87 (MQ=255)
tgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGt < 1:105270/87‑1 (MQ=255)
tgACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAAATTATCGCGTTTGGCCATTCTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAAc > 3:124375/1‑136 (MQ=255)
ccccAAAAGCATGTTTTATTACCACCGCAAAAAACGTTCCCCTCATCCAAGATTACCGCGTTGGGCCATTTTTGTCACGCTGATATACAAAAAAAACCCGGCGGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTAt < 6:153887/136‑1 (MQ=255)
aGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTAt > 5:184407/1‑138 (MQ=255)
gCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCTAACGAGAAGGGATGTAtt > 8:219149/1‑138 (MQ=255)
gCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTAtt > 1:153559/1‑138 (MQ=255)
ccAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTc > 7:306469/1‑138 (MQ=255)
ccAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTc > 8:315448/1‑138 (MQ=255)
atttaCACAGCACAAAAAGTTTCCCTCATGCAATATTTTCGCGTTTGGCAATTTTTGTCAAGCTTATTTAAATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTAc < 6:166447/138‑1 (MQ=255)
tttaCACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTg > 6:127015/1‑139 (MQ=255)
tttaCACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTg > 4:6342/1‑139 (MQ=255)
tttaCACAGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTg > 8:164507/1‑139 (MQ=255)
acaGGACAAAAAGTTTCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTaa > 5:166447/1‑137 (MQ=255)
ttCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCAtt > 3:405929/1‑138 (MQ=255)
ttCCCGCATGCAAGATTATCTCGGTTGGCCAGTTTTGTAAAGCTGATTTACATAAAAAAACAGGCTGGGTCTGCAGCCGGACCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGAAAAGTGTCAtt > 3:257666/1‑138 (MQ=255)
tCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCATTTa > 7:288973/1‑139 (MQ=255)
tCCCTCATGCAAGATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCATTTa > 1:51352/1‑139 (MQ=255)
|
GTCTCATATTTCTCCTCCTCTTTGCCATCAATGTCCGATTGTTTTATCTTATGTTGTCAGTTCTTAGACATGTGACATTAAATTAGCCAAAAGCATGTTTTATTTACACAGGACAAAAAGTTTCCCTCATGCAAAATTATCGCGTTTGGCCATTTTTGTCAAGCTGATTTACATAAAAAAACCGGCTGGGTCAGCAGCCGGTCCAAACGAGAAGGGATGTATTCAACGAACACTTTTACTGTAACAGCACAGTGTCATTTA > CP006881/2963807‑2964067
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
