Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F59 I7 R4 119 106.4 3785156 95.3% 3607253 127.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,972,835 T→C N192D (AAC→GAC)  U712_15325 ← Putative UTP‑‑glucose‑1‑phosphate uridylyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,972,8350TC99.1% 416.5 / ‑4.6 113N192D (AAC→GAC) U712_15325Putative UTP‑‑glucose‑1‑phosphate uridylyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (48/64);  total (48/65)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.77e-01

Only 100 of 113 total aligned reads displayed.

TGCCCCGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTTTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGATCACACTGGACTGAT  >  CP006881/2972701‑2972963
                                                                                                                                      |                                                                                                                                
tGCCCCGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGt                                                                                                                              >  1:173022/1‑139 (MQ=255)
 gCCCCGCGAGATGGTTTTATCCCATCCGTTACCGGCACTTCTCCTCCGCTTTCAGCTTATAATGCCACCAGCTAATAAAAAATATCCGGGGTTAAAATATAACGCCCTGCTGCGGCAAAATGCGACGGAGGGTCTTGtt                                                                                                                             <  6:30014/139‑1 (MQ=255)
 gCCCCGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGtt                                                                                                                             >  8:89958/1‑139 (MQ=255)
 gCCCCGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGtt                                                                                                                             >  4:294180/1‑139 (MQ=255)
 gCCCCGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGtt                                                                                                                             >  6:219575/1‑139 (MQ=255)
   cccGAGCTAAGCTTTTATCGCATCCTTTACCTGCACTTCTCCTCCGATATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGTTGTGAAAATATAACGCCCTGCTGCGGAAAAATGAGACGGAGGGTCTTGTTTa                                                                                                                           <  2:285541/139‑1 (MQ=255)
   cccGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATACCGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTa                                                                                                                           <  8:441043/139‑1 (MQ=255)
   cccGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGtt                                                                                                                             >  8:251225/1‑137 (MQ=255)
     cGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAgg                                                                                                                         >  1:185903/1‑139 (MQ=255)
      gcgCGAAGCTTTTATCGCATCCGTTACCGGCCCTTCTCCTCCGCTATCAGCGTCTACTGCCTCCGGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGCGACGGAGGGTCGTGTGTAGGc                                                                                                                        >  5:454697/3‑139 (MQ=255)
      gAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTa                                                                                                                           <  4:299813/136‑1 (MQ=255)
      gAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTa                                                                                                                           >  3:299813/1‑136 (MQ=255)
      gAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAggg                                                                                                                        >  5:261370/1‑138 (MQ=255)
      gAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGc                                                                                                                        >  3:385129/1‑139 (MQ=255)
      gAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGc                                                                                                                        >  2:193011/1‑139 (MQ=255)
      gAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGc                                                                                                                        >  2:279071/1‑139 (MQ=255)
      gAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGc                                                                                                                        >  1:123249/1‑139 (MQ=255)
      gAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTATCCTCCGCTATCAGCTTCTAATTACACCAGCTCATTAAAAATATCCGGTGTGAAAATATAACTCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGc                                                                                                                        >  7:451483/1‑139 (MQ=255)
        gCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCtt                                                                                                                      <  3:375742/139‑1 (MQ=255)
        gCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCtt                                                                                                                      <  8:14373/139‑1 (MQ=255)
          gAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCCGCTACAAATGCCACCAGCTCATTAAAAATATCCGGTGTTAAAATAAAACGCCCTGCTGCGGCAAAAGGACACGGAGGGTCTTGTTTAGGCtttt                                                                                                                    <  5:307224/139‑1 (MQ=255)
            aGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTcc                                                                                                                  <  2:123249/139‑1 (MQ=255)
            aGCTTTTATAGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCtttt                                                                                                                    <  2:256469/137‑1 (MQ=255)
                tttATCGCATCCGTTACCTGCACTTCACCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTTAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCcaca                                                                                                               <  3:50100/138‑1 (MQ=255)
                tttATCGCATCCGTTACCTGCACTTATCCTCCGATATCAGCTTCTAATGCCTCCCGCTAATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCcaca                                                                                                               <  1:115225/138‑1 (MQ=255)
                 ttATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTTTTGTTTAGGCTTTTCcaca                                                                                                               <  4:461048/137‑1 (MQ=255)
                 ttATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCcaca                                                                                                               <  1:61327/137‑1 (MQ=255)
                    tCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATc                                                                                                          <  5:378348/139‑1 (MQ=255)
                         tCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACaa                                                                                                              <  6:324419/130‑1 (MQ=255)
                         tCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACaa                                                                                                              >  5:324419/1‑130 (MQ=255)
                           cGTTACCTGCACTTCTCCTACGCTATCAGCTGCTTATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATg                                                                                                   <  2:393704/139‑1 (MQ=255)
                                    cACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGc                                                                                          >  7:154013/1‑139 (MQ=255)
                                    cACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGc                                                                                          >  7:207058/1‑139 (MQ=255)
                                    cACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGc                                                                                          <  8:26784/139‑1 (MQ=255)
                                    cACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGc                                                                                          <  8:298397/139‑1 (MQ=255)
                                    cACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGc                                                                                          >  6:236051/1‑139 (MQ=255)
                                    cACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTAAATAAAAATATCCGGTGTAAAAATATAACGCCCTGCTGCGGCAAAATGCGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGc                                                                                          <  5:156981/139‑1 (MQ=255)
                                         ctcctcCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTa                                                                                                     >  3:304704/1‑123 (MQ=255)
                                         ctcctcCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTa                                                                                                     <  4:304704/123‑1 (MQ=255)
                                         ctcctcCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCttt                                                                                     >  6:327716/1‑139 (MQ=255)
                                         ctcctcCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCttt                                                                                     >  4:65354/1‑139 (MQ=255)
                                          tcctccGCTATCAGCTTCTACTGCCTCCAGCGCATTAAAAATATCCGGTGTGAAAATATAACGCCATGCTGCGGCTAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCGCtttt                                                                                    >  1:100347/1‑139 (MQ=255)
                                              ccGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCaa                                                                                >  7:138964/1‑139 (MQ=255)
                                                 cTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAg                                                                             >  2:370881/1‑139 (MQ=255)
                                                    tCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAgg                                                                            <  5:236051/137‑1 (MQ=255)
                                                    tCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCt                                                                          <  1:279071/139‑1 (MQ=255)
                                                    tCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCt                                                                          >  6:248030/1‑139 (MQ=255)
                                                    tCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCt                                                                          <  3:425821/139‑1 (MQ=255)
                                                      aGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTcc                                                                        >  1:296374/1‑139 (MQ=255)
                                                      aGCTTCATATCCCTCCTGCTATTTAAAAATACTCGGTGTAAAAATCTAACGCCCGGCGGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCt                                                                          <  6:261370/137‑1 (MQ=255)
                                                              aTGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTAt                                                                <  8:138964/139‑1 (MQ=255)
                                                                 ccTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCAc                                                             <  3:9534/139‑1 (MQ=255)
                                                                  cTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAata                                                                                                            <  7:224122/91‑1 (MQ=255)
                                                                  cTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTa                                                                 >  5:256144/1‑134 (MQ=255)
                                                                  cTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTa                                                                 <  6:256144/134‑1 (MQ=255)
                                                                  cTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCAcc                                                            <  8:136219/139‑1 (MQ=255)
                                                                  cTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCAcc                                                            >  8:419878/1‑139 (MQ=255)
                                                                  cTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCAcc                                                            <  5:413070/139‑1 (MQ=255)
                                                                   tCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCAccc                                                           >  1:232471/1‑139 (MQ=255)
                                                                    ccAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACCGGCTCCCCTTTTATCAcccc                                                          >  6:52196/1‑139 (MQ=255)
                                                                        cTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTaa                                                      <  7:419878/139‑1 (MQ=255)
                                                                           aTTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAatga                                                   >  5:216117/1‑139 (MQ=255)
                                                                           aTTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAat                                                     <  4:385129/137‑1 (MQ=255)
                                                                           aTTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAat                                                     <  1:370881/137‑1 (MQ=255)
                                                                           aTTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAat                                                     <  6:216117/137‑1 (MQ=255)
                                                                             tAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCcaca                                                                                                               >  8:90031/1‑77 (MQ=255)
                                                                             tAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCcaca                                                                                                               <  7:90031/77‑1 (MQ=255)
                                                                             tAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAatgatg                                                 >  2:365267/1‑139 (MQ=255)
                                                                             tAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAatgatg                                                 >  1:151440/1‑139 (MQ=255)
                                                                                   tatCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAAtc                                           <  4:105200/139‑1 (MQ=255)
                                                                                     tCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTccc                                                                       <  7:9779/109‑1 (MQ=255)
                                                                                     tCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAAtcct                                         <  8:154013/139‑1 (MQ=255)
                                                                                     tCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAAtcct                                         <  8:207058/139‑1 (MQ=255)
                                                                                     tCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAAtcct                                         >  3:379490/1‑139 (MQ=255)
                                                                                          tgtgAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCCACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGtg                                    >  6:332840/1‑138 (MQ=255)
                                                                                          tgtcAAAATATAACGGCATGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGtt                                    <  1:357766/139‑1 (MQ=255)
                                                                                               aaaTATACCGCCCTGCTGCGGCAAACTTAGTCGGAGGGGCTTGTTTAGGCTTTTCCACAATATCCTGTATGATATAAAGCCATTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGt                               <  8:118890/139‑1 (MQ=255)
                                                                                                      aCGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTcccc                                                                      >  5:6013/1‑93 (MQ=255)
                                                                                                      aCGCCCTGCTGCGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCtttt                        <  2:160349/139‑1 (MQ=255)
                                                                                                            tgctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCt                                                                          >  5:289303/1‑83 (MQ=255)
                                                                                                            tgctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCt                                                                          <  6:289303/83‑1 (MQ=255)
                                                                                                            tgctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGt                               <  2:126475/126‑1 (MQ=255)
                                                                                                            tgctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGt                               >  1:126475/1‑126 (MQ=255)
                                                                                                            tgctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCg                  >  2:377315/1‑139 (MQ=255)
                                                                                                              ctgcGGCAAAATTAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGTCTCCCCTTTTATCACCCAGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGa                 <  5:312/138‑1 (MQ=255)
                                                                                                              ctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTAt                                                                <  2:189995/91‑1 (MQ=255)
                                                                                                              ctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTAt                                                                >  1:189995/1‑91 (MQ=255)
                                                                                                              ctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGa                 <  7:251225/138‑1 (MQ=255)
                                                                                                              ctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGa                 <  4:336310/138‑1 (MQ=255)
                                                                                                              ctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGa                 <  5:248030/138‑1 (MQ=255)
                                                                                                              ctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGa                 <  1:21202/138‑1 (MQ=255)
                                                                                                              ctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGa                 <  5:327716/138‑1 (MQ=255)
                                                                                                              ctgcGGCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGa                 <  1:365267/138‑1 (MQ=255)
                                                                                                              ctgcGGAAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGa                 <  7:295060/138‑1 (MQ=255)
                                                                                                                  ggCAAAATGAGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGATcaca            <  2:232471/139‑1 (MQ=255)
                                                                                                                     aaaaTGCGACGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGATCACACTg         <  2:185903/139‑1 (MQ=255)
                                                                                                                           agaCGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGATCACACTGGACTg    <  2:296374/138‑1 (MQ=255)
                                                                                                                             aCGGAGGGTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGt                               <  1:233708/109‑1 (MQ=255)
                                                                                                                                   ggTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCt                                                                          >  5:358705/1‑60 (MQ=255)
                                                                                                                                   ggTCTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCt                                                                          <  6:358705/60‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                
TGCCCCGAGCGAAGCTTTTATCGCATCCGTTACCTGCACTTCTCCTCCGCTATCAGCTTCTAATGCCTCCAGCTCATTAAAAATATCCGGTGTGAAAATATAACGCCCTGCTGCGGCAAAATGAGACGGAGGGTTTTGTTTAGGCTTTTCCACAATATCCTGTATGCGATAAAGCCCTTTTTCAACAGGCTCCCCTTTTATCACCCCGTAATGATGTAAATCCTCCGTTTTTGTTTCTTTTAAGCCGATCACACTGGACTGAT  >  CP006881/2972701‑2972963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A