Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F56 I13 R1 121 87.9 3230772 95.5% 3085387 127.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,191,622 T→C M9T (ATG→ACG)  U712_16420 → Uncharacterized protein yuzM

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,191,6220TC100.0% 296.7 / NA 77M9T (ATG→ACG) U712_16420Uncharacterized protein yuzM
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (47/30);  total (47/30)

CATGTCTCAACATCCGACTCCCTCCCGCCGTCATCTTCAAAACACCTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAATGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAGAACTCGAC  >  CP006881/3191490‑3191755
                                                                                                                                    |                                                                                                                                     
caTGTCTCAACATCCGACTCCCTCCCGCCGTCATCTTCAAAACACCGGTATATAACGACCAGTCGGAAGGCACATATAAAAAGAACAGCAACCAAACGAGGATCACAATGGAAAATCAGCAGCACTCTCCAACgccccc                                                                                                                                 >  1:268849/1‑139 (MQ=255)
           aTCCGACTCCCTCCCGCCGTCATCTTCAAAACACCTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTAttt                                                                                                                      <  1:248025/139‑1 (MQ=255)
             ccGACTCCCTCCCGCCGTCATCTTCAAAACACCTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCg                                                                                                                    >  6:288043/1‑139 (MQ=255)
                acgcccacccGCCGTCATCTACAACACACGTTTATAAAACTCCCAGTCTGAAGTAAACTATAAAATGAACAGAATCCAACGGAGGCTCACAATGGATAACCCGCAGCAATCTCAAACGCCGCCTTCCGTTAAATCGACa                                                                                                                 <  4:231281/136‑1 (MQ=255)
                    cctcccGCCGTCATCTTCAAAACACCTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAgg                                                                                                             <  4:82734/139‑1 (MQ=255)
                    cctcccGCCGTCATCTTCAAAACACCTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAgg                                                                                                             <  2:210283/139‑1 (MQ=255)
                     ctcccGCCGTCATCTTCAAAACACCTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGa                                                                                                            <  3:281371/139‑1 (MQ=255)
                           cagacATCTTCAAAACACGTTTAAATAACTCCAACTATTAACTAAAATAAAAAATTAACATAAACCAAAGGTTGAACACAATCGAAAATCACCAGCAATCTAACACGCCGCCTTCCGTTATTTCGACAAAGGATCAttt                                                                                                      <  2:392665/135‑1 (MQ=255)
                             gTCATCTTCAAAACACCTGTATATAACTCCCTGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCACCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGt                                                                                                    <  5:113190/139‑1 (MQ=255)
                                      aaaaCACCTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATg                                                                                           <  4:341770/139‑1 (MQ=255)
                                           cccTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACATAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATg                                                                                      <  3:315523/138‑1 (MQ=255)
                                           ccatttatataACACCAAGTATTAATGAAAATATAAAATGAACTTAAACAAATGGAGGATCACAATGTATAATCAGCAGAAATATCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATg                                                                                      <  6:268344/134‑1 (MQ=255)
                                             cTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTAtct                                                                                                >  3:67896/1‑127 (MQ=255)
                                             cTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTAtct                                                                                                <  4:67896/127‑1 (MQ=255)
                                                     aaCTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTgg                                                                             >  3:294869/1‑138 (MQ=255)
                                                       ctcaaaGTCTGAAGGAAAATATAAAATGCACAGAACAAAAAGTAGTAACACAATGGATAATCAGCAGCAATATCAACCGCAGCCTTCCTTTATTTCGACAAAGGATCATAAGTATCTCAATGACATGATTAACTGTAAt                                                                          >  8:269742/6‑139 (MQ=255)
                                                       cTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGa                                                                                                            <  2:292510/105‑1 (MQ=255)
                                                       cTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGa                                                                                                            >  1:292510/1‑105 (MQ=255)
                                                       cTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGaac                                                                          >  5:268344/1‑138 (MQ=255)
                                                       cTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAAt                                                                          >  7:108879/1‑139 (MQ=255)
                                                       cTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAAt                                                                          >  6:114219/1‑139 (MQ=255)
                                                       cTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGATGAACTGGAAt                                                                          >  1:158811/1‑139 (MQ=255)
                                                       cTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGACGCCTTCAGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAAt                                                                          >  8:121168/1‑139 (MQ=255)
                                                          ccAGTCTGAAGGAAACTATAGAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTg                                                                       >  2:156628/1‑139 (MQ=255)
                                                          ccAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCt                                                                                    <  6:384872/126‑1 (MQ=255)
                                                          ccAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCt                                                                                    >  5:384872/1‑126 (MQ=255)
                                                          ccAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTg                                                                       >  7:207299/1‑139 (MQ=255)
                                                          ccAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTg                                                                       >  7:281382/1‑139 (MQ=255)
                                                          ccAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTg                                                                       >  2:327711/1‑139 (MQ=255)
                                                          ccAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTg                                                                       >  3:231230/1‑139 (MQ=255)
                                                          ccAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTg                                                                       >  8:310062/1‑139 (MQ=255)
                                                            aGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCACTCTCAAACGCCGCCTTCCGTTATTTCGAAAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCt                                                                     >  2:198577/1‑139 (MQ=255)
                                                                  aatgAAACTATAAAATGAACCGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTcgcg                                                                 <  5:392155/134‑1 (MQ=255)
                                                                  aaGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGAt                                                               >  4:219597/1‑139 (MQ=255)
                                                                        aCTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACaa                                                                                                                >  6:171330/1‑84 (MQ=255)
                                                                        aCTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACaa                                                                                                                <  5:171330/84‑1 (MQ=255)
                                                                        aCTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGaaaa                                                          >  5:183737/1‑138 (MQ=255)
                                                                        aCTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGaaaa                                                          >  1:183586/1‑138 (MQ=255)
                                                                        aCTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGaaaa                                                          >  3:59994/1‑138 (MQ=255)
                                                                        aCTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGaaaa                                                          >  7:359443/1‑138 (MQ=255)
                                                                                 tGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCAttt                                                <  4:292735/139‑1 (MQ=255)
                                                                                   aaCAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCTCGATGAAAAAAGAGCATTTCa                                              >  2:166170/1‑139 (MQ=255)
                                                                                   aaCAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCa                                              >  6:268120/1‑139 (MQ=255)
                                                                                   aaCAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCa                                              >  3:16771/1‑139 (MQ=255)
                                                                                   aaCAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCa                                              <  8:203437/139‑1 (MQ=255)
                                                                                    aCAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCAt                                             >  4:190781/1‑139 (MQ=255)
                                                                                    aCAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCAt                                             >  2:58768/1‑139 (MQ=255)
                                                                                    aCAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCACGCGATGAAAAAAGCGCATTTCAt                                             >  3:4433/1‑139 (MQ=255)
                                                                                    aCAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTAAAACGACGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTCAACTGGAATTTCCTCTCGATGAAAAAAGCGCATTTCAt                                             >  6:207575/1‑139 (MQ=255)
                                                                                      aGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATgg                                           <  4:231230/139‑1 (MQ=255)
                                                                                        aaaCCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGgcg                                         <  5:114219/139‑1 (MQ=255)
                                                                                        aaaCCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCAGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGgcg                                         >  3:188267/1‑139 (MQ=255)
                                                                                           ccAAAGGAGGATCACACTGGATAATCAGCAGCAATCTCACACTCCGCCGTCAGTGATTTCGACAAAGGATCATTTGTATCTCACTGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCgcag                                      <  2:268849/139‑1 (MQ=255)
                                                                                           ccAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCgcag                                      <  5:268120/139‑1 (MQ=255)
                                                                                           ccAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCgcag                                      <  4:19169/139‑1 (MQ=255)
                                                                                           acaactgaggaTCACAATCGATACTCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCgcag                                      <  2:183586/133‑1 (MQ=255)
                                                                                             aaaGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACaa                                                                                                                >  1:6894/1‑63 (MQ=255)
                                                                                             aaaGGAGGATCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACaa                                                                                                                <  2:6894/63‑1 (MQ=255)
                                                                                                ggaggaTCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTg                                 >  4:69810/1‑139 (MQ=255)
                                                                                                   ggaTCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCgcagc                                     <  4:59585/132‑1 (MQ=255)
                                                                                                   ggaTCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCgcagc                                     >  3:59585/1‑132 (MQ=255)
                                                                                                    gaTCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAg                             >  1:368738/1‑139 (MQ=255)
                                                                                                      tCACAATGGATAATCAGCAGCAATCTCAAACGCCGCCGTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGa                           >  6:325581/1‑139 (MQ=255)
                                                                                                         caATGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCa                        <  8:281382/139‑1 (MQ=255)
                                                                                                            tGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAAc                     >  4:354457/1‑139 (MQ=255)
                                                                                                            tGGATAATCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTAGACAAAGGAACATTTGTATCTCAATGACTAGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCTCAGCAGTGCCAGGATCAAAc                     >  3:135086/1‑139 (MQ=255)
                                                                                                              gATAATCAGCAGCAATCTCAAGCGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGt                   >  7:82619/1‑139 (MQ=255)
                                                                                                                   tCAGCAGCAATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAg              >  3:128283/1‑139 (MQ=255)
                                                                                                                       cagcaATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGCTCAAACGTTAATGc             >  8:81645/1‑136 (MQ=255)
                                                                                                                        agcaATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAg          >  7:111746/1‑138 (MQ=255)
                                                                                                                        agcaATCTCAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAg          >  3:302267/1‑138 (MQ=255)
                                                                                                                             tctcAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAGAACTc     >  1:55155/1‑138 (MQ=255)
                                                                                                                             tctcAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAGAACTCg    >  7:105352/1‑139 (MQ=255)
                                                                                                                              ctcAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAGAACTCGa   <  3:219597/139‑1 (MQ=255)
                                                                                                                              cacAAACGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATATCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGAAGCAGTGCCAGGATCAAACGTTAAAGCAAGAACTCGa   <  2:92760/137‑1 (MQ=255)
                                                                                                                                 aaaCGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAACGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAGAACTCGa   <  5:313742/136‑1 (MQ=255)
                                                                                                                                 aaaCGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAGAACTCGAc  <  3:190781/137‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                     
CATGTCTCAACATCCGACTCCCTCCCGCCGTCATCTTCAAAACACCTGTATATAACTCCCAGTCTGAAGGAAACTATAAAATGAACAGAAACCAAAGGAGGATCACAATGGATAATCAGCAGCAATCTCAAATGCCGCCTTCCGTTATTTCGACAAAGGATCATTTGTATCTCAATGACATGCTGAACTGGAATTTGCTCGCGATGAAAAAAGCGCATTTCATGGCGCAGCAGTGCCAGGATCAAACGTTAAAGCAAGAACTCGAC  >  CP006881/3191490‑3191755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A