Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F58 I0 R3 223 82.2 2922920 95.2% 2782619 126.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 3,223,085 A→C 20.9% S133R (AGC→CGC)  U712_16600 → putative oxidoreductase yvrD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,223,0850AC20.9% 92.4 / 6.1 64S133R (AGC→CGC) U712_16600putative oxidoreductase yvrD
Reads supporting (aligned to +/- strand):  ref base A (37/13);  new base C (4/10);  total (41/23)
Fisher's exact test for biased strand distribution p-value = 3.48e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAACCTTGGTTTCTTCGAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGCACAAATGTG  >  CP006881/3222952‑3223219
                                                                                                                                      |                                                                                                                                      
caacCTTGGTTTCTTCGAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGATCGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGc                                                                                                                                   >  2:147980/1‑139 (MQ=255)
 aacCTTGGTTTCTTCGAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCGGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑CGCGGcc                                                                                                                                  <  8:181028/139‑1 (MQ=255)
 aacCTGGGTTTCTTCGTGTAAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAACCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGcc                                                                                                                                  <  1:51064/139‑1 (MQ=255)
        gTTTCTTCGAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCAttt                                                                                                                            >  6:252967/1‑138 (MQ=255)
             ttcGAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAata                                                                                                                      >  6:114494/1‑139 (MQ=255)
             ttcGAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAAGCAATATTTAGAAGTGATCGTGATGAGCTCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAAGTGATGCCAAAAACAACCGCCCGCATTTaaat                                                                                                                        >  1:185330/1‑137 (MQ=255)
                gAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTTATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATAtt                                                                                                                    <  8:221441/138‑1 (MQ=255)
                       aaGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATCTTTCactta                                                                                                             >  7:31509/1‑134 (MQ=255)
                            ttCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAg                                                                                                       >  4:99378/1‑139 (MQ=255)
                            ttCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAg                                                                                                       >  5:349509/1‑139 (MQ=255)
                            ttCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATCCTTGCCAAAAAC‑AGCGGCCGCAGTTTAAATATTGCAAGTGAAGCAg                                                                                                       >  5:209288/1‑139 (MQ=255)
                              cGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGc                                                                                                     >  6:345044/1‑139 (MQ=255)
                              cGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGc                                                                                                     >  7:326937/1‑139 (MQ=255)
                              cGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGc                                                                                                     >  3:251692/1‑139 (MQ=255)
                              cGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGc                                                                                                     >  5:28543/1‑139 (MQ=255)
                              cGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGc                                                                                                     >  5:263692/1‑139 (MQ=255)
                                    tgtgACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCaaa                                                                                               >  1:331275/1‑139 (MQ=255)
                                         cAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCa                                                                                                        >  6:346592/1‑125 (MQ=255)
                                         cAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCa                                                                                                        <  5:346592/125‑1 (MQ=255)
                                               aaGAGTGCAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTGCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCAAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGcc                                                                                       <  7:152084/136‑1 (MQ=255)
                                                 gcgTGCAAACAATTTTTCGAAGTCACCGTGAGGAGCGCCGTGCGGACAAGCCGCCACTTCCTACCAAAAATGCTTCCCAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACga                                                                                  <  1:159278/137‑1 (MQ=255)
                                                 gagTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACga                                                                                  <  8:122366/139‑1 (MQ=255)
                                                 gagTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACga                                                                                  >  3:52923/1‑139 (MQ=255)
                                                 gagTGGAATAAATTTTTCGAAGTGAACGTTATGTGCGCCGTTCGTACAAGCCGTCAATTCCTTCCAAAAATGGTTGCCAAAAAC‑AGCGGCCGCATTTTTAATATTTCAAGTGAATCAGGCGTCAAACCGCTGCCAACga                                                                                  <  8:4573/139‑1 (MQ=255)
                                                 gagGGGAATAAATATTTCGAAGTCAACGGGATGAGCGCCGTTCGCACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACga                                                                                  <  5:42436/139‑1 (MQ=255)
                                                  agTGTATTCAATATTTCGATGTCAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTCCAAAAACC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACga                                                                                  <  2:331275/138‑1 (MQ=255)
                                                  agTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGAAAGTGAAGCAGGCGTCAAACCGCTGCCAAAgat                                                                                 >  7:4573/1‑139 (MQ=255)
                                                  agTGGAAACAATATTTCGAAGTCAACGTCCTGCGCGCCGGTCGGACAAGCCGCCACTTCCTACAAAAATTGCTAGCCAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACgat                                                                                 <  1:271704/139‑1 (MQ=255)
                                                   gTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACgatg                                                                                <  4:180919/139‑1 (MQ=255)
                                                    tGGAATCAATATTTCGAAGTGAACTTGATGAGCGCCGTTGGCACAAGCCGGAACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACgatg                                                                                <  4:289599/138‑1 (MQ=255)
                                                    tGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTTCAAGTGAAGCAGGCGTCAACCCGCTGCCAACgatga                                                                               >  4:65738/1‑139 (MQ=255)
                                                    tGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACgatga                                                                               >  3:37649/1‑139 (MQ=255)
                                                    tGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTACAAAAAAGCTTGCCAAAAAC‑AGCGGCCGCTTTTTAAATATTTCAAGTTGAACAGGCGTAAAACCCCTTCCAAccgtgt                                                                               >  3:929/1‑134 (MQ=255)
                                                      gAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCACCgatgat                                                                              >  1:130751/1‑138 (MQ=255)
                                                      gAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGAtt                                                                             >  4:79893/1‑139 (MQ=255)
                                                         tCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCa                                                                          <  5:114494/139‑1 (MQ=255)
                                                            atatTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCAGTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGAATCCATAc                                                                       >  4:56845/1‑139 (MQ=255)
                                                                     aGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGAc                                                               >  3:56243/1‑138 (MQ=255)
                                                                     aGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGAc                                                               >  1:4941/1‑138 (MQ=255)
                                                                         aaCGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTGCAGACGGAATGACaaaac                                                          >  2:238727/1‑138 (MQ=255)
                                                                              gatgaGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCg                                                                                            <  8:178567/100‑1 (MQ=255)
                                                                              gatgaGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCg                                                                                            >  7:178567/1‑100 (MQ=255)
                                                                               agccgcgcCGTGCGGACACGCCGCCACTTCATACCAAAAATGCTGGCCAAAACC‑CGCGGCCGCATTTTAAATATTGCACGTGAAGCAGGCGGCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCAc                                                    <  3:150722/135‑1 (MQ=255)
                                                                                   gcgcCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGAt                                                >  1:81719/1‑139 (MQ=255)
                                                                                    cgcCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGAt                                                >  2:101074/1‑138 (MQ=255)
                                                                                    cgcCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTCAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGAt                                                >  3:249566/1‑138 (MQ=255)
                                                                                    ccccGTTCGCACAAGCCGTCACTTCATACAAAAAATGCTTCCAAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCAAACGATGATTCCATACTCAATGAAAAAAACGGCACTGATc                                               <  3:99378/137‑1 (MQ=255)
                                                                                      ccGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAACCC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCGATACTCAATGACAAAAACGGCACTGATCAg                                             >  5:180448/1‑139 (MQ=255)
                                                                                         ttCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAACC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCt                                          >  8:171326/1‑139 (MQ=255)
                                                                                                 aGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGAACAGCCTTTCAagag                                  >  1:265112/1‑139 (MQ=255)
                                                                                                 aGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAagag                                  >  8:4556/1‑139 (MQ=255)
                                                                                                        aCTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGc                           >  1:217973/1‑139 (MQ=255)
                                                                                                        aCTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGc                           >  1:198761/1‑139 (MQ=255)
                                                                                                        aCTTCCTACCAAAAATGCTTCCCAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGc                           <  3:143221/139‑1 (MQ=255)
                                                                                                            ccttccAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACga                                                                                  <  6:75053/80‑1 (MQ=255)
                                                                                                            ccttccAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACga                                                                                  >  5:75053/1‑80 (MQ=255)
                                                                                                            acttacAAAAATGCTTGCCAAAAAC‑CGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCCACCCTGATGCCATACTCAATGTCAAAAACGGCACTGATAAGCCTTTCAAGAGGAATTGCTGa                        >  6:207064/2‑138 (MQ=255)
                                                                                                             cttccAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGCTGaaa                      >  2:13516/1‑139 (MQ=255)
                                                                                                             cttccAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGCTGaaa                      >  7:332333/1‑139 (MQ=255)
                                                                                                             cttccAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGCTGaaa                      >  3:123716/1‑139 (MQ=255)
                                                                                                                            ccaaaaaaC‑CCCGGCCGAATTTTAAATATTCCATGTGACGCCGGCGACAACCCGCGGCCAACTATGATTCCATACTCAATGACAAACACGGCACTGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGcac         <  6:263692/134‑1 (MQ=255)
                                                                                                                             ccAAAACC‑CTCGGCCTCATTTAAAATATAGCAAGTGACGCAGGGGTCAATCCGGTGCGAACGTTGATTCCATACTCAATGACACAAACTGCACGGATCAGACTTTCAAGAGGAATCGCTGAAATGACAAAAGGCACaa       <  7:84807/138‑1 (MQ=255)
                                                                                                                                 acaC‑AGCGGCCGCATTTAAAATATTCCAAGTGACGCCGGCGTAAAACCGCGGCAAACGATGATTCCATACTCAATCACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGCACAAAtgtg  <  2:81719/137‑1 (MQ=255)
                                                                                                                                 aaaC‑CGCGGCCGCATTTTAAATATTGCAAGTGACGCAGGCGACAACCCGCTGCCAACGATGATTCCATACTCAATCACAAACACGGCACTGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGCACAAAtgtg  <  4:123716/139‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
CAACCTTGGTTTCTTCGAGGTAAAAGACTTCGCCGATGTGACAGATGAAGAGTGGAATCAATATTTCGAAGTGAACGTGATGAGCGCCGTTCGGACAAGCCGTCACTTCCTTCCAAAAATGCTTGCCAAAAAC‑AGCGGCCGCATTTTAAATATTGCAAGTGAAGCAGGCGTCAAACCGCTGCCAACGATGATTCCATACTCAATGACAAAAACGGCACTGATCAGCCTTTCAAGAGGAATGGCTGAAATGACAAAAGGCACAAATGTG  >  CP006881/3222952‑3223219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A