Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F59 I0 R4
|
226 |
76.6 |
2995274 |
95.4% |
2857491 |
127.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP006881 |
3,166,744 |
A→C |
20.1% |
L272V (TTA→GTA) |
U712_16260 ← |
putative ABC transporter permease protein yurN |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,166,744 | 0 | A | C | 20.1%
| 55.2
/ 7.5
| 38 | L272V (TTA→GTA) | U712_16260 | putative ABC transporter permease protein yurN |
| Reads supporting (aligned to +/- strand): ref base A (22/8); new base C (2/6); total (24/14) |
| Fisher's exact test for biased strand distribution p-value = 3.37e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCACCTCAATGTGCTGGTCAGGCACCGGCTCCAATCTGAACGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGCTCATTAAAGACCGT > CP006881/3166609‑3166879
|
tCACCTCAATGTGCTGGTCAGGCACCGGCTCCAATCTGAACGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAacac > 5:16785/1‑139 (MQ=255)
aaTGTGCTGGTCAGGCACCGGCTCCAATCTGAACGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTg > 5:272476/1‑139 (MQ=255)
aaTGTGCTGGTCAGGCACCGGCTCCAAACTGAACGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCGCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCCTAATGATTAACACGACAGTg > 2:11714/1‑139 (MQ=255)
gTCAGGCACCGGGACCAATCTGAACTAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCGTTTCCTGTTTAAAAGAAATTCATTTGCATGAGCTATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCt < 2:262845/139‑1 (MQ=255)
gTCAGGCACCGGCTCCAATCTGAACGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCACGCGTAATGATTAACACGACAGTGGCAATCGCt > 5:227506/1‑139 (MQ=255)
gTCAGGCACCGGCTCCAATCTGAACGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCt > 1:72711/1‑139 (MQ=255)
gCACCGGCTCCAATCTGAACGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGc > 1:237647/1‑139 (MQ=255)
ggCTCCACTCGGACCCAAGCTGGCTTCTTCTGAGGCACCAGCCGTAACTCCTCCTTGCCGGTTTAAAAGAACTTCATTTGCATGAGCTATACTGCAAGCGTAATTATAAACACGACAGTGGCAATCGCTGAGGCGTAGc < 6:282914/139‑1 (MQ=255)
ggCTCCAATCTGAAGTAAGCTGTCTTCTGCTGAGGCCGCATCTGTTACTCCTCCTTGCCGGTTTTAAATAACTTCATTTGCTGGTGCTATAATGCACGCTTAATTATAACCACGACAGTGGCAATCGCTGAGGCGTAGc < 6:227506/139‑1 (MQ=255)
cacataaTCTGTTTTGTTGTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTAAAATAACTTCATTTGATTGAGCTATAATGCATGCTTAATTATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATc < 6:268030/133‑1 (MQ=255)
aaCGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCTCTGAGGCTTAGCCCATCATATcat > 8:133023/1‑137 (MQ=255)
aaCGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGCCACTCGCTGAGGCGTAGCCCATCATATCCt > 2:208168/1‑139 (MQ=255)
aaCGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGAGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATcat > 8:128098/1‑137 (MQ=255)
aTCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATTTCCTTGGt > 4:8693/1‑138 (MQ=255)
ttctGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGgctgtct > 5:268030/1‑134 (MQ=255)
ctgcgccagcaCCAGATACACCTCCTTACCGGTTTTAAACAAATTAATTTGCTTGCGCTATAATCCACGCTTATTCATAACCACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCtt < 2:52102/130‑1 (MQ=255)
agcaTCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATaaa > 2:136902/1‑138 (MQ=255)
gcaTCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCATGAGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTAGTAACTGCGCTTTTATATaaagg > 4:41521/1‑137 (MQ=255)
cAGTTACTCCTCATTTCCGTTTTTAACCAAATTAATTTGCATGAGCTAAAATCCAAGCTTAATTATAACCACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTg < 4:290654/139‑1 (MQ=255)
tcctccTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTACCACGACAGTGGCAATCGCTGAGGCGTAGCCCATCAGATCCTTTGTAAAGGCGCTTTTATATAACAACGTGCTCAAGa > 8:75306/1‑139 (MQ=255)
tcctccTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGa > 7:353926/1‑139 (MQ=255)
tcctccTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCCCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGa > 8:371593/1‑139 (MQ=255)
cctTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTc > 6:356644/1‑139 (MQ=255)
cctTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTc > 7:306725/1‑139 (MQ=255)
ttgcgctttaAACGAACTTCATTTCAATGAGCGATCAGCAAAGCTTAATTAATAACACGACAGGGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCt < 6:100121/131‑1 (MQ=255)
ccGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACg > 6:288781/1‑139 (MQ=255)
cATGAGCGATAATGCAAGCGTAATGATTACCACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATTAAAACGTGCTCAAGACTTCTGACGCTTTTCCCTGCCCGCCCCCTGt > 5:49409/1‑138 (MQ=255)
cATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGt > 7:67807/1‑138 (MQ=255)
aTGAGCGATAATGCAAGCGTAATGATAAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCa < 3:177271/139‑1 (MQ=255)
aGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCaaaa > 7:188074/1‑139 (MQ=255)
aTAATGAACGCTTAATGATAACCACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTa < 5:345168/139‑1 (MQ=255)
aTAATCCAAGCTTAATTATAAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTa < 7:291109/139‑1 (MQ=255)
tGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGc < 3:135786/139‑1 (MQ=255)
aaTGATTACCACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGCTCATTaaa < 7:295778/138‑1 (MQ=255)
aaTGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGCTCATTaaa < 1:136902/138‑1 (MQ=255)
aTGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGCTCATTAAAGa > 7:369293/1‑139 (MQ=255)
aTGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGCTCATTAAAGa > 6:296147/1‑139 (MQ=255)
aTGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCACGGCCCTCCGCATGTCAAAATGTACGGCTCATTAAAGa > 6:110793/1‑139 (MQ=255)
tGATAACCACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGCTCATTAAAGAc < 6:272476/139‑1 (MQ=255)
aaCACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGCTCATTAAAGACCGt > 1:355526/1‑137 (MQ=255)
acacGACAGTGGCAATCGCTGAGGCGTAGCCcatcat > 7:296033/1‑37 (MQ=255)
acacGACAGTGGCAATCGCTGAGGCGTAGCCcatcat < 8:296033/37‑1 (MQ=255)
|
TCACCTCAATGTGCTGGTCAGGCACCGGCTCCAATCTGAACGAATCTGTCTTCTTCTGAGGCAGCATCAGTTACTCCTCCTTTCCGGTTTTAAAGAACTTCATTTGCATGAGCGATAATGCAAGCGTAATGATTAACACGACAGTGGCAATCGCTGAGGCGTAGCCCATCATATCCTTTGTAAAGGCGCTTTTATATAAAAACGTGCTCAAGACTTCTGACGCTTTTCCCGGCCCGCCGCCTGTCAAAATGTACGGCTCATTAAAGACCGT > CP006881/3166609‑3166879
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
