mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 52,751 | G→T | 48.5% | intergenic (+199/‑12) | U712_00220 → / → U712_00225 | Sporulation‑specific protease yabG/Protein veg |
| RA | CP006881 | 186,066 | T→G | 30.5% | K126N (AAA→AAC) | U712_00845 ← | Uncharacterized protein ybbC |
| RA | CP006881 | 230,494 | A→C | 17.8% | N322T (AAC→ACC) | U712_01065 → | Fatty‑acid peroxygenase |
| RA | CP006881 | 257,096 | G→T | 6.2% | T161K (ACG→AAG) | U712_01200 ← | putative glucosamine‑6‑phosphate deaminase 2 |
| RA | CP006881 | 260,580 | A→G | 6.4% | S299P (TCA→CCA) | U712_01220 ← | putative amino acid permease YbgF |
| RA | CP006881 | 278,241 | A→T | 20.1% | T299S (ACG→TCG) | U712_01300 → | putative transporter ycbK |
| RA | CP006881 | 295,958 | A→G | 5.4% | A111A (GCT→GCC) | U712_01415 ← | putative transcriptional regulatory protein yccH |
| RA | CP006881 | 679,233 | G→C | 9.8% | S256T (AGC→ACC) | U712_03320 → | Putative lipoprotein yerB |
| RA | CP006881 | 701,079 | T→C | 7.7% | L148P (CTC→CCC) | U712_03405 → | putative RNA methyltransferase yefA |
| RA | CP006881 | 744,068 | A→T | 9.5% | K502N (AAA→AAT) | U712_03585 → | Lipoprotein lipO |
| RA | CP006881 | 859,372 | A→T | 5.5% | K240N (AAA→AAT) | U712_04165 → | putative ABC transporter ATP‑binding protein YfiC |
| RA | CP006881 | 886,407 | T→A | 5.5% | I252I (ATT→ATA) | U712_04305 → | putative isomerase yfhB |
| RA | CP006881 | 895,672 | T→G | 10.3% | F254V (TTT→GTT) | U712_04380 → | Uncharacterized protein yfhO |
| RA | CP006881 | 958,473 | G→T | 13.3% | E148* (GAA→TAA) | U712_04680 → | Uncharacterized protein yhcS |
| RA | CP006881 | 986,184 | C→A | 29.9% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 1,005,996 | T→A | 7.1% | I429L (ATA→TTA) | U712_04925 ← | Na(+)/H(+) antiporter NhaC |
| RA | CP006881 | 1,011,322 | T→G | 25.0% | V406G (GTT→GGT) | U712_04945 → | putative multidrug resistance ABC transporter ATP‑binding/permease protein YheH |
| RA | CP006881 | 1,026,635 | T→G | 20.7% | I41S (ATC→AGC) | U712_05035 → | Uncharacterized protein yhaP |
| RA | CP006881 | 1,026,641 | C→A | 26.6% | S43Y (TCT→TAT) | U712_05035 → | Uncharacterized protein yhaP |
| RA | CP006881 | 1,119,432 | A→T | 8.4% | G870G (GGA→GGT) | U712_05510 → | Cell wall‑associated protease |
| RA | CP006881 | 1,170,393 | Δ1 bp | 6.1% | coding (731/954 nt) | U712_05805 → | Transcriptional activator protein med |
| RA | CP006881 | 1,180,490 | T→A | 5.6% | V44E (GTG→GAG) | U712_05860 → | Hypothetical Protein |
| RA | CP006881 | 1,183,703 | C→T | 5.5% | P274L (CCG→CTG) | U712_05870 → | Oligopeptide‑binding protein oppA |
| RA | CP006881 | 1,317,956 | C→T | 6.3% | A212V (GCG→GTG) | U712_06715 → | Putative mannosyltransferase ykcB |
| RA | CP006881 | 1,320,908 | G→A | 5.3% | intergenic (+313/+65) | U712_06725 → / ← U712_06730 | Hypothetical Protein/putative serine protease do‑like protein htrA |
| RA | CP006881 | 1,345,152 | A→G | 14.4% | P32P (CCA→CCG) | U712_06865 → | Organic hydroperoxide resistance protein ohrB |
| RA | CP006881 | 1,379,782 | T→C | 13.6% | R226R (CGT→CGC) | U712_07055 → | Ktr system potassium uptake protein D |
| RA | CP006881 | 1,396,533 | C→T | 5.2% | I99I (ATC→ATT) | U712_07145 → | HTH‑type transcriptional regulator mhqR |
| RA | CP006881 | 1,428,900 | A→G | 5.6% | K44E (AAA→GAA) | U712_07335 → | putative oxidoreductase ykwC |
| RA | CP006881 | 1,474,968 | G→T | 39.3% | S88* (TCA→TAA) | U712_07575 ← | Uncharacterized protein ykoA |
| RA | CP006881 | 1,524,942 | T→G | 12.2% | G112G (GGT→GGG) | U712_07850 → | Cytochrome c oxidase subunit 1 |
| RA | CP006881 | 1,557,253 | C→T | 5.8% | A171V (GCC→GTC) | U712_08030 → | Division initiation protein |
| RA | CP006881 | 1,569,105 | C→A | 6.5% | I146I (ATC→ATA) | U712_08075 → | RNA polymerase sigma‑G factor |
| RA | CP006881 | 1,653,491 | C→T | 11.2% | T112I (ACA→ATA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,788 | G→A | 37.9% | G211D (GGC→GAC) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,867 | G→A | 13.0% | M237I (ATG→ATA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,661,585 | A→G | 10.7% | T90T (ACA→ACG) | U712_08545 → | putative flagellar hook‑length control protein |
| RA | CP006881 | 1,669,467 | C→T | 37.5% | R204* (CGA→TGA) | U712_08600 → | Flagellar biosynthetic protein fliR |
| RA | CP006881 | 1,671,433 | G→C | 45.3% | D228H (GAT→CAT) | U712_08610 → | Flagellar biosynthesis protein flhA |
| RA | CP006881 | 1,687,976 | A→G | 7.5% | T302A (ACA→GCA) | U712_08695 → | Zinc metalloprotease rasP |
| RA | CP006881 | 1,845,945 | T→C | 5.3% | intergenic (+76/‑259) | U712_09185 → / → U712_09190 | Uncharacterized protein ynaC/putative N‑acetyltransferase YnaD |
| RA | CP006881 | 2,054,382 | A→C | 100% | intergenic (+60/‑41) | U712_10180 → / → U712_10185 | Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase |
| RA | CP006881 | 2,177,974 | C→A | 5.2% | V8L (GTA→TTA) | U712_10895 ← | Dihydrodipicolinate reductase |
| RA | CP006881 | 2,181,670 | T→A | 6.9% | K19I (AAA→ATA) | U712_10920 ← | Menaquinol‑cytochrome c reductase cytochrome b/c subunit |
| RA | CP006881 | 2,189,447 | T→C | 7.2% | T243A (ACT→GCT) | U712_10970 ← | Tryptophan synthase alpha chain |
| RA | CP006881 | 2,189,468 | G→A | 5.7% | L236L (CTA→TTA) | U712_10970 ← | Tryptophan synthase alpha chain |
| RA | CP006881 | 2,189,469 | C→T | 5.6% | E235E (GAG→GAA) | U712_10970 ← | Tryptophan synthase alpha chain |
| RA | CP006881 | 2,189,532 | C→T | 5.3% | M214I (ATG→ATA) | U712_10970 ← | Tryptophan synthase alpha chain |
| RA | CP006881 | 2,189,544 | G→A | 8.2% | R210R (CGC→CGT) | U712_10970 ← | Tryptophan synthase alpha chain |
| RA | CP006881 | 2,241,604 | G→A | 6.5% | H266Y (CAT→TAT) | U712_11265 ← | D‑alanyl‑D‑alanine carboxypeptidase dacB |
| RA | CP006881 | 2,305,499 | A→T | 8.3% | V237E (GTG→GAG) | U712_11655 ← | Putative propionyl‑CoA carboxylase beta chain |
| RA | CP006881 | 2,339,741 | A→G | 8.0% | M138T (ATG→ACG) | U712_11830 ← | DNA repair protein recN |
| RA | CP006881 | 2,411,528 | A→G | 5.4% | N162N (AAT→AAC) | U712_12280 ← | putative endonuclease 4 |
| RA | CP006881 | 2,470,510 | T→C | 7.8% | I48V (ATT→GTT) | U712_12610 ← | Sporulation‑specific extracellular nuclease |
| RA | CP006881 | 2,627,471 | G→A | 5.5% | C304C (TGC→TGT) | U712_13530 ← | tRNA‑specific 2‑thiouridylase mnmA |
| RA | CP006881 | 2,632,433 | T→A | 7.8% | K17N (AAA→AAT) | U712_13555 ← | Hypothetical Protein |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,856,028 | A→G | 6.1% | intergenic (‑303/+39) | U712_14735 ← / ← U712_14740 | Tyrosyl‑tRNA synthetase 1/Acetyl‑coenzyme A synthetase |
| RA | CP006881 | 2,963,937 | G→A | 9.2% | intergenic (‑124/+156) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 2,991,176 | A→T | 39.1% | intergenic (‑12/+6) | U712_21340 ← / ← U712_21345 | tRNA‑Leu/tRNA‑Gly |
| RA | CP006881 | 2,998,644 | A→G | 10.4% | F402S (TTT→TCT) | U712_15405 ← | Uncharacterized protein yuaG |
| RA | CP006881 | 3,005,997 | G→T | 9.8% | intergenic (+95/‑271) | U712_15440 → / → U712_15445 | Uncharacterized protein yuaB/Ktr system potassium uptake protein A |
| RA | CP006881 | 3,046,307 | T→C | 6.1% | N80S (AAC→AGC) | U712_15650 ← | Uncharacterized protein yugE |
| RA | CP006881 | 3,059,122 | C→T | 6.3% | R62W (CGG→TGG) | U712_15715 → | putative ABC transporter ATP‑binding protein YufO |
| RA | CP006881 | 3,065,649 | A→T | 13.9% | N400Y (AAC→TAC) | U712_15740 → | Na(+)/H(+) antiporter subunit A |
| RA | CP006881 | 3,161,278 | G→A | 8.0% | S83L (TCA→TTA) | U712_16225 ← | Allantoate amidohydrolase |
| RA | CP006881 | 3,166,744 | A→C | 20.1% | L272V (TTA→GTA) | U712_16260 ← | putative ABC transporter permease protein yurN |
| RA | CP006881 | 3,186,704 | C→A | 20.0% | E389* (GAA→TAA) | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,210,982 | C→T | 5.2% | S310S (AGC→AGT) | U712_16525 → | Spore germination protein A2 |
| RA | CP006881 | 3,221,689 | G→A | 6.8% | I201I (ATC→ATT) | U712_16590 ← | putative ABC transporter substrate‑binding lipoprotein yvrC |
| RA | CP006881 | 3,272,345 | T→G | 14.7% | K157N (AAA→AAC) | U712_16830 ← | Carboxylesterase |
| RA | CP006881 | 3,275,197 | A→G | 7.4% | intergenic (+269/‑23) | U712_16850 → / → U712_16855 | HTH‑type transcriptional repressor rghR/Hypothetical Protein |
| RA | CP006881 | 3,304,242 | C→A | 11.6% | T240K (ACA→AAA) | U712_16995 → | Arabinose metabolism transcriptional repressor |
| RA | CP006881 | 3,348,914 | C→G | 21.9% | G142G (GGC→GGG) | U712_17210 → | Para‑nitrobenzyl esterase |
| RA | CP006881 | 3,437,370 | C→A | 23.2% | Q185K (CAA→AAA) | U712_17650 → | putative MFS‑type transporter yvkA |
| RA | CP006881 | 3,485,403 | T→A | 6.1% | Y788F (TAT→TTT) | U712_17900 ← | Minor teichoic acid biosynthesis protein ggaB |
| RA | CP006881 | 3,498,073 | C→A | 12.4% | D68Y (GAT→TAT) | U712_17935 ← | putative poly(glycerol‑phosphate) alpha‑glucosyltransferase |
| RA | CP006881 | 3,521,682 | A→G | 6.5% | T49T (ACA→ACG) | U712_18050 → | Ribose import ATP‑binding protein RbsA |
| RA | CP006881 | 3,529,094 | C→T | 5.8% | G35D (GGC→GAC) | U712_18080 ← | Acetolactate synthase |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,586,300 | C→A | 6.4% | G117C (GGC→TGC) | U712_18425 ← | Urease subunit beta |
| RA | CP006881 | 3,593,713 | G→A | 7.0% | T160M (ACG→ATG) | U712_18490 ← | Uncharacterized protein ywmC |
| RA | CP006881 | 3,615,489 | G→T | 23.2% | L174L (CTC→CTA) | U712_18635 ← | Peptide chain release factor 1 |
| RA | CP006881 | 3,627,469 | T→C | 13.3% | K104R (AAG→AGG) | U712_18705 ← | Sporulation initiation phosphotransferase F |
| RA | CP006881 | 3,653,809 | C→A | 48.6% | intergenic (‑209/‑104) | U712_18820 ← / → U712_18825 | putative beta‑barrel protein ywiB/Subtilosin‑A |
| RA | CP006881 | 3,656,377 | T→C | 5.8% | L228P (CTG→CCG) | U712_18840 → | Putative ABC transporter ATP‑binding protein AlbC |
| RA | CP006881 | 3,681,968 | T→G | 14.1% | T50P (ACA→CCA) | U712_18970 ← | Octanoyl‑[GcvH]:protein N‑octanoyltransferase |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,066:1 | +A | 93.4% | intergenic (‑180/‑121) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | G→T | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,226 | A→C | 22.9% | intergenic (‑58/‑471) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,735,910 | C→A | 37.3% | V66L (GTA→TTA) | U712_19255 ← | Quinol oxidase subunit 2 |
| RA | CP006881 | 3,754,612 | T→G | 26.4% | K85N (AAA→AAC) | U712_19355 ← | Putative ribosomal RNA large subunit methyltransferase YwbD |
| RA | CP006881 | 3,784,235 | A→G | 7.5% | T463A (ACG→GCG) | U712_19515 → | Catalase X |
| RA | CP006881 | 3,825,369 | A→T | 6.4% | intergenic (+572/+286) | U712_19725 → / ← U712_19735 | Purine nucleoside transport protein nupG/Uncharacterized protein yxiS |
| RA | CP006881 | 3,869,891 | C→G | 18.2% | D79H (GAC→CAC) | U712_19940 ← | Deoxyribose‑phosphate aldolase |
| RA | CP006881 | 3,869,922 | A→T | 17.6% | N68K (AAT→AAA) | U712_19940 ← | Deoxyribose‑phosphate aldolase |
| RA | CP006881 | 3,905,563 | G→T | 19.5% | D86Y (GAT→TAT) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,905,575 | G→C | 14.9% | G90R (GGC→CGC) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,906,788 | G→A | 5.2% | W312* (TGG→TAG) | U712_20140 → | putative metabolite transport protein CsbC |
| RA | CP006881 | 4,010,978 | G→T | 6.2% | C618F (TGC→TTC) | U712_20715 → | Uncharacterized protein yyaL |
| RA | CP006881 | 4,031,607 | T→C | 5.5% | T25A (ACG→GCG) | U712_20820 ← | Protein jag |
| RA | Exported | 121 | G→C | 5.1% | intergenic (–/‑2857) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 2,207 | C→T | 34.1% | intergenic (–/‑771) | – / → eryR | –//vntifkey=4 |
| JC | Exported | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 3,729 | T→G | 6.1% | intergenic (+14/‑142) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,735 | A→T | 9.6% | intergenic (+20/‑136) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,741 | G→T | 9.3% | intergenic (+26/‑130) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,743 | A→T | 5.3% | intergenic (+28/‑128) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,750 | C→A | 5.3% | intergenic (+35/‑121) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,783 | G→T | 5.8% | intergenic (+68/‑88) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| JC | Exported | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 4,625 | A→C | 5.9% | K252T (AAG→ACG) | ampR → | /vntifkey=4 |
| RA | Exported | 4,649 | A→C | 7.8% | Y260S (TAC→TCC) | ampR → | /vntifkey=4 |
| RA | Exported | 5,049 | C→T | 100% | intergenic (+318/‑839) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,173 | T→G | 6.6% | intergenic (+442/‑715) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,302 | A→C | 5.7% | intergenic (+571/‑586) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,464 | T→G | 5.1% | intergenic (+733/‑424) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 6,006 | T→G | 5.8% | V40G (GTT→GGT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,012 | A→C | 7.1% | Q42P (CAA→CCA) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,031 | A→C | 5.7% | A48A (GCA→GCC) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,256 | A→C | 5.4% | intergenic (+45/–) | lacZalpha → / – | /vntifkey=4/– |
| RA | Exported | 6,277 | A→C | 5.1% | intergenic (+66/–) | lacZalpha → / – | /vntifkey=4/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 166436–171323 | 176232–171335 | 13–9797 | 19 [14] | [15] 21 | U712_21020–[U712_21045] | U712_21020,U712_21025,U712_21030,U712_21035,U712_21040,[U712_21045] |
| * | * | ÷ | CP006881 | 245172 | 246106 | 935 | 18 [15] | [15] 18 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067440 | 1068625 | 1186 | 18 [16] | [16] 17 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149051 | 1150722 | 1672 | 17 [16] | [15] 21 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503058 | 1504645 | 1588 | 18 [16] | [16] 18 | U712_07740 | U712_07740 |
| * | * | ÷ | CP006881 | 1562270 | 1566623 | 4354 | 18 [16] | [16] 18 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 2261295 | 2262062 | 768 | 20 [15] | [16] 18 | [U712_11400] | [U712_11400] |
| * | * | ÷ | CP006881 | 3725699 | 3728135 | 2437 | 24 [10] | [15] 21 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757682 | 3759669 | 1988 | 19 [16] | [16] 18 | U712_19375 | U712_19375 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 9457 = | 88 (1.250) | 5 (0.080) | 5/220 | NT | 5.0% | coding (2464/2466 nt) | U712_00040 | DNA gyrase subunit A |
| ? | CP006881 | 3301929 = | 106 (1.590) | coding (1392/1395 nt) | U712_16990 | Arabinose‑proton symporter | |||||
| * | ? | Exported | = 2140 | 6998 (0.990) | 1371 (0.190) | 156/232 | NT | 18.6% | intergenic (–/‑838) | –/eryR | –//vntifkey=4 |
| ? | Exported | 6389 = | 5018 (0.710) | intergenic (+178/–) | lacZalpha/– | /vntifkey=4/– | |||||