Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F59 I7 R4 119 106.4 3785156 95.3% 3607253 127.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 1,282,039 (G)6→7 intergenic (‑97/‑9) U712_06475 ← / → U712_06480 Uncharacterized protein yjqA/UPF0714 protein yjqB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,282,0331.G97.2% 260.5 / ‑0.1 72intergenic (‑91/‑15)U712_06475/U712_06480Uncharacterized protein yjqA/UPF0714 protein yjqB
Reads supporting (aligned to +/- strand):  ref base . (2/0);  new base G (44/26);  total (46/26)
Fisher's exact test for biased strand distribution p-value = 5.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GACAGTGTTGATGCATTGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AA‑GGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGTCCTCGGTCCTCACGGCGGCAGAAT  >  CP006881/1281899‑1282166
                                                                                                                                        |                                                                                                                                     
gACAGTGTTGATGCATTGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AA‑gggg                                                                                                                                   >  8:234692/1‑139 (MQ=255)
  cAGTGTTGATGCATTGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AA‑gggggg                                                                                                                                 <  4:178437/139‑1 (MQ=255)
     tgtTGATGCATTGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AA‑gggggggcg                                                                                                                              >  4:187636/1‑136 (MQ=255)
       ttGATGCATAGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGAATTCTATCAAATCATACTATATACAAGGTTTTCATTCATACATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AA‑gggggggcgtt                                                                                                                            <  2:292903/139‑6 (MQ=255)
             cATTGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGa                                                                                                                        <  2:293973/138‑1 (MQ=255)
               ttGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATgg                                                                                                                     >  1:239550/1‑139 (MQ=255)
               ttGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATg                                                                                                                      >  4:299569/1‑138 (MQ=255)
                  ccGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAg                                                                                                                  <  7:282801/139‑1 (MQ=255)
                    gAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGat                                                                                                                <  4:55968/139‑1 (MQ=255)
                     aGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATgg                                                                                                                     >  3:448927/1‑133 (MQ=255)
                     aGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATgg                                                                                                                     <  4:448927/133‑1 (MQ=255)
                     aGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGata                                                                                                               <  4:132885/139‑1 (MQ=255)
                          tCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGCCTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGAtatgtat                                                                                                          >  2:454024/1‑139 (MQ=255)
                               cAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCATGATGGAAGATATGTATGACAg                                                                                                     >  4:350758/1‑139 (MQ=255)
                                      ccccATCATATACCTCCTCTGCGTATTCTATCAAATAATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCg                                                                                              <  3:134373/139‑1 (MQ=255)
                                       cccATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCgg                                                                                             <  2:354036/139‑1 (MQ=255)
                                          atcatATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAATCTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGccc                                                                                          >  3:142812/1‑139 (MQ=255)
                                          atcatATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGAt                                                                                                                       >  2:207854/1‑110 (MQ=255)
                                          atcatATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGata                                                                                                               >  6:296650/1‑118 (MQ=255)
                                          atcatATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGata                                                                                                               <  5:296650/118‑1 (MQ=255)
                                          atcatATACCTCCTCTGCGTATTCTATCAAATCATAATATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGAt                                                                                                                       <  1:207854/110‑1 (MQ=255)
                                           tcatATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCt                                                                                         <  5:407534/139‑1 (MQ=255)
                                             atatACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCttt                                                                                       <  7:234692/139‑1 (MQ=255)
                                                   ctcctcTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTATAG‑GGGGGGCGTGCAAGATGGAAGATATGTATGACAGCTTTGCTGCCCTTTCTGAtt                                                                                 >  6:105656/1‑139 (MQ=255)
                                                   ctcctcTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCtt                                                                                 >  5:146475/1‑139 (MQ=255)
                                                     cctcTGCGTATTCTATCAAATCATACTATATAAAAGGTTTTCATTCATAGATGAGAAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGATGATATGTATGACAGCTTTGCGGCCCTTTCTGCtgcg                                                                               >  2:47043/1‑136 (MQ=255)
                                                     cctcTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCt                                                                               >  2:341568/1‑139 (MQ=255)
                                                     cctcTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCt                                                                               >  2:347977/1‑139 (MQ=255)
                                                     cctcTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCt                                                                               >  8:299177/1‑139 (MQ=255)
                                                      ctctGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGATGATATGTATGACAGCTTTGCGGCCCTTTCTGCGTcgg                                                                              >  6:49896/1‑137 (MQ=255)
                                                      ctctGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCt                                                                               >  2:272518/1‑138 (MQ=255)
                                                      ctctGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCt                                                                               >  3:257152/1‑138 (MQ=255)
                                                      ctctGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTg                                                                              <  4:257152/139‑1 (MQ=255)
                                                      ctctGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGAAAGCTTTGCGGCCCTTTCTGCTTCt                                                                               >  8:5929/1‑138 (MQ=255)
                                                         tGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGt                                                                           >  3:325578/1‑139 (MQ=255)
                                                           cGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGt                                                                           <  4:325578/137‑1 (MQ=255)
                                                                tCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTa                                                                    >  2:55620/1‑139 (MQ=255)
                                                                 cTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTa                                                                    <  3:299569/138‑1 (MQ=255)
                                                                    tCAAATCATACTATAAAAAAGGTTTTCATTCATAGATTAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTAc                                                                   <  1:125241/136‑1 (MQ=255)
                                                                    tCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCg                                                                 <  1:341568/138‑1 (MQ=255)
                                                                    tCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCg                                                                 <  1:347977/138‑1 (MQ=255)
                                                                     cAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGa                                                               >  5:378984/1‑139 (MQ=255)
                                                                     cAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGGACCGGa                                                               >  1:390264/1‑139 (MQ=255)
                                                                      aaaTCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGa                                                               <  6:146475/138‑1 (MQ=255)
                                                                            tACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGGttttttt                                                        >  1:430725/1‑138 (MQ=255)
                                                                              cTATAACAAAGGTTTTGCTTCCGAGTTGAGTAGCGTCGAGTGGTGCTGAGTGGGA‑AAGGGGGGGCGTTCAAGATGGAAGATAGGTATGCGCGCTGTGCGGCGGTTTCTGGTTCGGAGTCGGAGTGCCGGGGTATTGATg                                                      >  6:438203/1‑139 (MQ=255)
                                                                                 taAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATgag                                                    >  8:279598/1‑138 (MQ=255)
                                                                                 taAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATgag                                                    >  2:299670/1‑138 (MQ=255)
                                                                                        ggTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGATaaaaa                                            <  1:299670/139‑1 (MQ=255)
                                                                                         gTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCGGCTGCTGAGTCGGAGTACCGGAGTATTTATGAGGAGAAAAAc                                           >  2:102117/1‑139 (MQ=255)
                                                                                           tttCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCGTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACg                                          >  8:100287/1‑138 (MQ=255)
                                                                                                         gagtagagtaAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGTAGAAAAACGGAATTGAGCTGAtgg                           >  3:14/1‑137 (MQ=255)
                                                                                                            tagagtaAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCg                                                                                              >  1:56983/1‑69 (MQ=255)
                                                                                                            tagagtaAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCg                                                                                              <  2:56983/69‑1 (MQ=255)
                                                                                                            tagagtaAACTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGtg                         >  2:244326/1‑137 (MQ=255)
                                                                                                               agtaAACTGGAGCTGACTGGTA‑AA‑GGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTAGCGGCCCTTTCTGCTACTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCTAATCGTCCTCgg                    >  1:373799/1‑139 (MQ=255)
                                                                                                                    aCTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGTTTATTTATGAGGAGAAAAACGGAAGTTCTCTTATCGTCCTCGGTCCt                >  3:266725/1‑139 (MQ=255)
                                                                                                                    aCTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTTTGATGAGAAAAACGGAAGTGAGCTTATCGTACTCGGTcat                >  3:77995/1‑137 (MQ=255)
                                                                                                                    aCTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGTCCTCGGTccg                >  3:132242/1‑138 (MQ=255)
                                                                                                                    aCTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGTCCTCGGTCCt                >  3:272739/1‑139 (MQ=255)
                                                                                                                    aCTGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCATATCGTCCTCGGTACt                >  4:397010/1‑139 (MQ=255)
                                                                                                                      tGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACg                                          <  4:21635/111‑1 (MQ=255)
                                                                                                                      tGGTGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACg                                          >  3:21635/1‑111 (MQ=255)
                                                                                                                         tGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTc                                                                                      >  5:149306/1‑64 (MQ=255)
                                                                                                                         tGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTc                                                                                      <  6:149306/64‑1 (MQ=255)
                                                                                                                         tGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATTAGGAGAAAAACGCAAGTGAGCTTATCGTCCTCGTTCCTCAcgg           >  8:132438/1‑139 (MQ=255)
                                                                                                                         tGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGaaaaa                                            >  4:208494/1‑106 (MQ=255)
                                                                                                                         tGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGaaaaa                                            <  3:208494/106‑1 (MQ=255)
                                                                                                                         tGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGTCCTCGGTCCTCAcgg           >  5:380465/1‑139 (MQ=255)
                                                                                                                         tGCTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGAATATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGTCCTCGGTCCTAAcgc           >  1:75186/1‑138 (MQ=255)
                                                                                                                           cTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGat                                                              >  1:166114/1‑86 (MQ=255)
                                                                                                                           cTGACTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGat                                                              <  2:166114/86‑1 (MQ=255)
                                                                                                                              tggggTA‑AAGGGGGGGCGTTCTATTTGGAAGATATGTATGAGAGCTTTGCGGCCCTATCTGGTTCTGAGTCTGAGTACCTTATTATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGTCCTCGGTCCTCAcggcgg        <  2:390264/134‑1 (MQ=255)
                                                                                                                              aCTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTAc                                                                   >  4:290075/1‑78 (MQ=255)
                                                                                                                              aCTGGTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTAc                                                                   <  3:290075/78‑1 (MQ=255)
                                                                                                                                  gTA‑AAGGGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCGGCTTCTGAGTCGGAGTACCGGGTTATTTTTGAGGAGAAAAAACGTAGTGCGCGTATAGTCCTCGGGCCTGACGGGGGCAGaaa  >  2:236130/1‑138 (MQ=255)
                                                                                                                                        |                                                                                                                                     
GACAGTGTTGATGCATTGCCGAGTAATCCATCAATAAACCCCATCATATACCTCCTCTGCGTATTCTATCAAATCATACTATAAAAAAGGTTTTCATTCATAGATGAGTAGAGTAAACTGGTGCTGACTGGTA‑AA‑GGGGGGCGTTCAAGATGGAAGATATGTATGACAGCTTTGCGGCCCTTTCTGCTTCTGAGTCGGAGTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGTCCTCGGTCCTCACGGCGGCAGAAT  >  CP006881/1281899‑1282166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A