Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F59 I7 R4
|
119 |
106.4 |
3785156 |
95.3% |
3607253 |
127.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
1,380,183 |
T→C |
M360T (ATG→ACG) |
U712_07055 → |
Ktr system potassium uptake protein D |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 1,380,183 | 0 | T | C | 96.6%
| 303.7
/ NA
| 89 | M360T (ATG→ACG) | U712_07055 | Ktr system potassium uptake protein D |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (47/39); minor base A (2/1); total (49/40) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 101 total aligned reads displayed.
GGAGGCATAAGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGATGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAG > CP006881/1380047‑1380318
|
ggAGGCATAAGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACgg > 8:31651/1‑139 (MQ=255)
ggCATAAGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGa > 2:360497/1‑139 (MQ=255)
cATAAGGACAACGACTTTTGCTTTGCACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGCTGACGGCGATc > 5:200691/1‑139 (MQ=255)
cATAAGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCATTAAGGCCGTAAAGGTATTCAAACTGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTAACGATGACGGCGATc > 8:230036/1‑139 (MQ=255)
cATAAGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTTTAAAGATGACGGCGATc > 5:312918/1‑139 (MQ=255)
cATAAGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATc > 5:468183/1‑139 (MQ=255)
aGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGc > 2:68409/1‑139 (MQ=255)
aaCGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGCTCCTGCTCGtt > 7:431614/1‑139 (MQ=255)
aaCGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCggt > 1:272561/1‑137 (MQ=255)
aaCGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGtt > 4:253850/1‑139 (MQ=255)
aaCGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGtt > 5:99855/1‑139 (MQ=255)
aCGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGttt > 1:177906/1‑139 (MQ=255)
cGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGtttt < 8:276389/139‑1 (MQ=255)
cGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTAAAACGGGAGCTTCACCCTGCTGCCTTGATGAAGTCGCTTGTTGTCACGATGCCGGCGCTCCTGCTCGtttt > 2:318940/1‑139 (MQ=255)
gACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGttttt > 3:425285/1‑139 (MQ=255)
tGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGgcgc < 1:360497/138‑1 (MQ=255)
tGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGgcgc < 3:464306/138‑1 (MQ=255)
tGAACCTTCTTGCTCTGTTTCATTTTGACCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGaca < 4:307983/137‑1 (MQ=255)
tGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGacac < 2:177906/138‑1 (MQ=255)
tGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGacac < 6:161536/138‑1 (MQ=255)
tGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGAAGGCGCTACTGCTCGTGTTTGGCGCGACACt > 2:151051/1‑139 (MQ=255)
tGAACCTTCTTGCGCTGGTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGaca < 1:130074/137‑1 (MQ=255)
ccTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCAtt < 1:286343/139‑1 (MQ=255)
tcttGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGacac < 2:23562/131‑1 (MQ=255)
tcttGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGacac > 1:23562/1‑131 (MQ=255)
tcttGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCGGCTCGTTTTTGGCGCGGCACTCATTCTg > 1:452104/1‑139 (MQ=255)
cttGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCt < 5:403944/137‑1 (MQ=255)
gcgcTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGAc < 8:117694/137‑1 (MQ=255)
cgcTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCAt < 3:253850/139‑1 (MQ=255)
cgcTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGGCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCAt < 8:50680/139‑1 (MQ=255)
cgcTGTTTCATTTTGCCCGCGGCAATAAGGCCGGAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCAt < 4:120839/139‑1 (MQ=255)
tttCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGgcgc < 5:8527/116‑1 (MQ=255)
tttCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGGTTTTGgcgc > 6:8527/1‑116 (MQ=255)
tttCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTAACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTa > 4:20443/1‑136 (MQ=255)
ttttGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCAt < 4:90600/129‑1 (MQ=255)
ttttGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCAt > 3:90600/1‑129 (MQ=255)
cccGCGGCAATAAGGCCGTAAAGGTATTCAACCGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACAtt < 2:169885/138‑1 (MQ=255)
cccGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTGACGATGACGGCGATCCTGCGCGGTTTTGGCGCGACACTCATTCTGACCAGTTCAGAAAAACATTc > 3:268704/1‑139 (MQ=255)
cccGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATTCAGGCGATCCTGCTGGTTTTTGGCGCGACACGCATTCTGACCTTTACGGAAAAACAATc > 5:14506/1‑139 (MQ=255)
cccGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGCTCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTc > 2:51497/1‑139 (MQ=255)
cccGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTc > 1:151287/1‑139 (MQ=255)
cccGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTc > 1:198124/1‑139 (MQ=255)
cccGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGAGCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTc > 3:256683/1‑139 (MQ=255)
aGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCt < 4:26607/139‑1 (MQ=255)
ggCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCtt < 6:200691/139‑1 (MQ=255)
gCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCttt < 1:460177/139‑1 (MQ=255)
gTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCt < 4:155937/134‑1 (MQ=255)
gTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCt < 4:162864/134‑1 (MQ=255)
gTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCt > 3:162864/1‑134 (MQ=255)
gTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCt > 3:155937/1‑134 (MQ=255)
gTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTtttgt > 2:249071/1‑139 (MQ=255)
gTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGAAGCCGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAAAATTCCCAGCTGGAGCtttttt > 6:282833/1‑137 (MQ=255)
tAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTtttgtt > 5:132869/1‑139 (MQ=255)
tAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTtttgtt > 4:237369/1‑139 (MQ=255)
ggTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGaa < 1:68409/139‑1 (MQ=255)
aTTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACCTTCCCTGCTGGAGCTTTTGTTTGAAgtg > 2:107059/1‑139 (MQ=255)
aTTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCt < 6:447819/126‑1 (MQ=255)
aTTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCt > 5:447819/1‑126 (MQ=255)
aTTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAgtg > 3:365159/1‑139 (MQ=255)
aTTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAgtg > 7:80962/1‑139 (MQ=255)
ttCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGa > 4:56382/1‑134 (MQ=255)
ttCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGa < 3:56382/134‑1 (MQ=255)
ttCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAgtgt > 7:73052/1‑139 (MQ=255)
cAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGc > 6:449956/1‑139 (MQ=255)
cAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGc > 2:150047/1‑139 (MQ=255)
cAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGc > 6:337521/1‑139 (MQ=255)
acaCGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCt < 6:312918/137‑1 (MQ=255)
aaccGGGAGCGTCACCCTGCTGACTTGATGAAGGCGCTTGTTCTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGGTTGAAGTGTGCt < 7:183284/136‑1 (MQ=255)
aCGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCg < 7:65745/139‑1 (MQ=255)
aCGGGAGCTTCACCCTGCTGACGTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCg < 1:115253/139‑1 (MQ=255)
ggAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCa < 5:282833/139‑1 (MQ=255)
gAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCAt < 6:132869/139‑1 (MQ=255)
gctgACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCg > 1:285230/1‑139 (MQ=255)
ctgACTTGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCgg > 5:400221/1‑139 (MQ=255)
ttGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTa < 6:401774/73‑1 (MQ=255)
ttGATGAAGTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTa > 5:401774/1‑73 (MQ=255)
gaAGTCGCTTGTTGTCACGATGACGGCGATCCTGGTGGTTTTTGGCGCGACCCTCATTCTGCCCATTACAGAAAAACATTCCCTGCTGGAGATTTTGTTTGAAGTGTGCTAGGCATTCGGTACAACCGGCCTATCGCtt > 3:458904/1‑139 (MQ=255)
gTCGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTgg > 5:78488/1‑138 (MQ=255)
cGCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGTAAt < 3:117162/139‑1 (MQ=255)
gCTTGTTGTCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAAt < 1:263714/138‑1 (MQ=255)
ttgtCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGaa < 8:428030/62‑1 (MQ=255)
ttgtCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGaa > 7:428030/1‑62 (MQ=255)
ttgtCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACgg < 6:400221/138‑1 (MQ=255)
ttgtCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACgg < 1:249071/138‑1 (MQ=255)
tgtCACGATGAAGGCGATCCTGCTAGTTTTTGGCGCGACACTCATTCTGAACATTACAGAAAAACATTCCATGCTGGAGCTTTTGTTTGAAGTGTTCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCa < 4:256683/139‑1 (MQ=255)
gtCACGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCa < 2:272561/138‑1 (MQ=255)
gtCACGATGACGGAGATCCTGCTCGGTTTTGGCGCGACACTCATTCTGAACATTTCAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCa < 4:54546/138‑1 (MQ=255)
aCGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGAtt > 7:318987/1‑139 (MQ=255)
aCGATGACGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGAtt > 1:454818/1‑139 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 1:331022/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 5:93696/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 2:285230/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 5:449956/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 3:20443/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 5:337521/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 3:302215/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 1:150047/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 8:73052/139‑1 (MQ=255)
tgacgGCGATCCTGCTCGGTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 6:468183/139‑1 (MQ=255)
tgacgGCGATCCTGCTAGTTTTTGGAGCGACACTCATTCTGACCATTTCAGAAAAACTTTCACTGGTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAg < 1:237865/139‑1 (MQ=255)
|
GGAGGCATAAGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTTTCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTCACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGATGGCGATCCTGCTCGTTTTTGGCGCGACACTCATTCTGACCATTACAGAAAAACATTCCCTGCTGGAGCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCGGCCTATCGCTTGGAATTACGGCAGATTTGAG > CP006881/1380047‑1380318
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
