Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F44 I0 R1 115 55.9 2109214 91.7% 1934149 142.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 786,458 Δ1 bp 100% coding (826/1053 nt) aroG → 3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913786,4580A.98.3% 255.1 / ‑3.5 60coding (826/1053 nt)aroG3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base . (35/24);  total (36/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

CCATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCAAAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGG  >  NC_000913/786319‑786594
                                                                                                                                           |                                                                                                                                        
ccATCTCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCaaaa                                                                                                                                       <  1:703034/143‑1 (MQ=255)
    aggaTTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCaaaagcag                                                                                                                                   <  2:196945/140‑5 (MQ=255)
        ttCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCCgatgg                                                                                                                              >  2:996067/1‑143 (MQ=255)
        ttCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATCTCAGCCATGCTAACTCGTCCAAACAATTC‑ACAAGCAgatgg                                                                                                                              >  1:75616/1‑143 (MQ=255)
           tGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGATGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATT‑AAAAAGCAgatggaag                                                                                                                           >  2:149453/1‑141 (MQ=255)
            gcgcGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGt                                                                                                                          <  1:121514/143‑1 (MQ=255)
            gcgcGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGt                                                                                                                          <  1:121848/143‑1 (MQ=255)
                 gcggAAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTtgtg                                                                                                                     <  1:594443/143‑1 (MQ=255)
                         gagcagaaCGACAGCGAGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGTCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGtt                                                                                                             <  2:504177/137‑1 (MQ=255)
                            ccTAACTACAGCGCGAAGCACGTTGCTGAAGAAAGCGAAGGTCTTAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGc                                                                                                          >  1:1002089/1‑143 (MQ=255)
                                aCTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCcagc                                                                                                      <  1:665539/143‑1 (MQ=255)
                                 cTACAGCGCGAAGCACGTTGCGGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCcagca                                                                                                     <  1:965636/143‑1 (MQ=255)
                                     aGCGCGAAGCACGTTGCTGACGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTGACTCGTCCACACAACTC‑ACAAGCAGATGGATGTTTGTGCTGACGTCTGCcagcagcgt                                                                                                 >  2:268135/1‑140 (MQ=255)
                                     aGCGCGAAGCACGTTGCTGAAGTGAAGGATTGGCTTAACAAATCAGGCCTGCCAGCACAGGTGATGATCAATTTCATCTAAGCCAACGCGTCCAAACAAGTC‑AAAAGCAGAGGGATGTCACTGCTGACGTTTGCCATCAGCtt                                                                                                 >  2:517461/1‑143 (MQ=255)
                                       cgcgAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGc                                                                                               >  1:843602/1‑143 (MQ=255)
                                         cggaGCACGTGTCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCAGAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCg                                                                                             <  2:348510/140‑1 (MQ=255)
                                         cgAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCg                                                                                             <  1:270319/143‑1 (MQ=255)
                                             gCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTgg                                                                                         <  1:794829/143‑1 (MQ=255)
                                                 gTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGCTGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGaa                                                                                     >  1:413800/1‑143 (MQ=255)
                                                 gTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGCTGCTTGTGCTGACGTTTGCCATCAGATTGCCGGTgacaaa                                                                                     >  1:336748/1‑138 (MQ=255)
                                                   tGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCGGCCAGCACAGACGCTGGTGCAGTGCAGGCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGaaaa                                                                                   <  1:239305/143‑1 (MQ=255)
                                                           tGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCGGCCGTTTGCCAGCAGATTGCCGGTGGCCAAACGGCCatta                                                                           >  2:268230/1‑143 (MQ=255)
                                                                    ggCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGa                                                                  >  1:330696/1‑143 (MQ=255)
                                                                     gCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAAATTGCCAGTGGCAAAAAGGCCATTATTGGCGTGAt                                                                 >  1:654805/1‑143 (MQ=255)
                                                                      cggAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGAtg                                                                <  1:985180/141‑1 (MQ=255)
                                                                      cTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGAtg                                                                <  1:606686/143‑1 (MQ=255)
                                                                      cTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGAtg                                                                >  2:1048242/1‑143 (MQ=255)
                                                                      cTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTGCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCGGATGGATGTTTGTGCTGACGTGTGCGAGCGGATTGCCGCTAGCGAAAATGCCATTATTGGCGTGAtg                                                                <  2:228346/143‑1 (MQ=255)
                                                                         aaCAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTGCGGCCATGCTAGCTCGTCCAAACAATTC‑AATGGCAGATGGATGGGTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGAtggtg                                                             <  2:580054/143‑1 (MQ=255)
                                                                            aaaGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTCTTGGCGTGATGGTGGaa                                                          >  1:650759/1‑143 (MQ=255)
                                                                              aGCAGGCCTGCCAGCACAGGTGATGCTCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGCCGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGCTGGTGGCAAg                                                        >  2:189984/1‑143 (MQ=255)
                                                                              aGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAg                                                        >  1:739467/1‑143 (MQ=255)
                                                                               gCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCGGGTGGCGAAAAGGCAATTATTGGCGTGATGGTGGAAAGc                                                       >  2:291223/1‑143 (MQ=255)
                                                                               gCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGc                                                       >  2:609519/1‑143 (MQ=255)
                                                                                   ggcggcgaGCACGGGTGGTGATCGAGTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGTCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATc                                                   <  1:275311/136‑1 (MQ=255)
                                                                                     cTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCtg                                                 >  1:248260/1‑143 (MQ=255)
                                                                                       gCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCAGACGTTGGTCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCtggt                                               <  1:396698/143‑1 (MQ=255)
                                                                                          aGCACGGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGa                                            <  2:559351/143‑1 (MQ=255)
                                                                                             agaGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAgg                                         <  2:205440/141‑1 (MQ=255)
                                                                                             acaGGTGGTGATCGATTTCAGCCATGCTAGCTCGTCCAAACAATTC‑AAAAGCAGATGGAGGTTTGTGCTGACGTTTGCCAGCAGATGGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAgg                                         <  2:694685/143‑1 (MQ=255)
                                                                                               aGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATCATTGGGGTCATGGTGGAAAGCCATCGGGTGGAAGGCa                                       >  2:103087/1‑143 (MQ=255)
                                                                                                 gTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAAt                                     >  1:1041397/1‑143 (MQ=255)
                                                                                                   gatgatCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCa                                   >  1:854102/1‑143 (MQ=255)
                                                                                                       atCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCCTTATCGCCGTGATGGGGGCCAGCCACCTGGTGGAACGCAAACAGAGc                               >  2:401664/1‑143 (MQ=255)
                                                                                                       atCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGc                               <  1:297735/143‑1 (MQ=255)
                                                                                                       atCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGc                               >  2:580390/1‑143 (MQ=255)
                                                                                                        tCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGcc                              >  1:706359/1‑143 (MQ=255)
                                                                                                        tCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATGGGCGTGATGGTGGAGAGCCATCTGGGGGGAGGCAATCAGAGcc                              >  1:672836/1‑143 (MQ=255)
                                                                                                          gATTTCAGCCATGCTAACTCGTCCCAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGCAAAGGCCATTATTGGCGTGGTGGTGGAAAGCCATCTGGTGGAAGGCAGTCAGCGCCTc                            >  1:457478/1‑143 (MQ=255)
                                                                                                                  ccATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCgg                    >  1:883205/1‑143 (MQ=255)
                                                                                                                  ccATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCgg                    >  2:941410/1‑143 (MQ=255)
                                                                                                                  ccACGCCAACTCGTCCAAACAATTC‑AACAGCAGGTGGATGTTTGCGCTGACGTTGTCCACCAGACTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCgg                    <  1:941072/143‑1 (MQ=255)
                                                                                                                         aaCGCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCg             <  1:868572/143‑1 (MQ=255)
                                                                                                                          aCTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGACAACGCGATTATTGGAGTGGGAGTGGGAAGCCATATGGTGGCAGGACCTCAGGGCCTCGACAGCGGGGAGCCGc            >  2:265123/1‑143 (MQ=255)
                                                                                                                          aCTCGTCCAAACAATTC‑AAAAGCAGATGGATGTCTGTGCTGCCGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGc            <  2:473489/143‑1 (MQ=255)
                                                                                                                           cTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGCGCCGCt           >  2:582245/1‑143 (MQ=255)
                                                                                                                            tCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTg          >  1:687489/1‑143 (MQ=255)
                                                                                                                               tCCAAACAATTC‑AAAAGCAGATGGCTGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGCTGGTGGTAAGCCATCTGGTGCTAGGCCATCAGAGCCTCGCGCGCGGGGCGCCGCTGGcc       >  2:464593/1‑143 (MQ=255)
                                                                                                                                 cAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTa     >  2:209124/1‑143 (MQ=255)
                                                                                                                                 cAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCAAGCAGATTGCTGGTGGCGAAAAGGCCATTATTGGAGTGATGGAGGAAAGCCATCTGGTGGGAGTCAATCAGAGCGTCGAGGGCGGGGGGACGCAGGCGTa     >  2:347058/1‑143 (MQ=255)
                                                                                                                                  aaaCAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTAc    >  2:791142/1‑143 (MQ=255)
                                                                                                                                    aCAATTC‑AAAAGCAGATGTATGTTTGTGCTGACGTTTTCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTCGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACgg  <  1:291223/143‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                        
CCATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCAAAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGCGTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGG  >  NC_000913/786319‑786594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A