Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F44 I1 R1
|
25 |
56.0 |
2153868 |
90.0% |
1938481 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
710,682 |
IS5 (–) +4 bp |
coding (41‑44/87 nt) |
uof ← |
RyhB‑regulated fur leader peptide |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
273955 = | NA (NA) | 54 (0.930) |
44/282 |
0.2 |
100% |
noncoding (1195/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
= 710685 |
0 (0.000) | coding (41/87 nt) |
uof |
RyhB‑regulated fur leader peptide |
| * |
? |
NC_000913 |
= 275149 | NA (NA) | 90 (1.540) |
54/282 |
0.0 |
100% |
noncoding (1/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
710682 = |
0 (0.000) | coding (44/87 nt) |
uof |
RyhB‑regulated fur leader peptide |
ACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/274088‑273955
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAACCATCA < NC_000913/710685‑710549
agggagaAAATGGCGAAGAAAAGGTCGAAATGGGATGATTCAAGGAATAGACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAG < 1:537236/136‑1
CGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAGATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGT > 1:830202/1‑143
CGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGGAAGg > 1:133406/1‑142
CTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAACATCGGCTCAAACATGAAGAAATGAAATGACAGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAA > 1:258727/1‑143
agccAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGCAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTACCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTA < 1:400547/139‑1
GGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTA < 1:961302/143‑1
GGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTA < 2:705050/143‑1
AGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAAC < 1:1047653/143‑1
GGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCCTAGTAACAGGACA > 2:733685/1‑143
GTCTAAATAGGCTGATTCAAGGCCTTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGATTAGTAACCGGACAc > 2:198418/1‑142
TCTAAACAGGCTGATGCAAGGCATTGACGGGAGAAAAAATCGGCTCGAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGA < 2:579579/143‑1
CTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGAT < 1:359364/143‑1
AGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCA < 1:12862/143‑1
TGATTCAAGGCATTTACGGGAGAAAGAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGACGAGGAGAATTTCCCCGCTTGTTCGCACCTTCCCTAGTGAAGTGGAGCGCGTAGTAAGAGGACAGATTCGGCATGAC > 1:274021/1‑143
TGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGgc > 2:427255/1‑141
TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTACTGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGc > 1:254566/1‑142
TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGA < 2:362836/143‑1
TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGA < 2:353681/143‑1
TCAAGGCATGTACGGGAGAAAAGCTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCTCTCATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGAT < 1:484002/143‑1
AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATCCCGCCTGACTGATga > 1:757507/1‑141
AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTGAGTAACAGGACAGAATCCGCATGACTGATAA > 2:568838/1‑143
TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATAC < 1:78295/143‑1
TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCG < 2:905692/143‑1
ACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGC < 1:513549/143‑1
GAAAAGATCGGCTCGAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAA < 2:3181/143‑1
AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAA < 2:228916/143‑1
ATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTCATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGCTAACAATACCGCCCTAAAGAAAGC > 2:322399/1‑143
gcCTCAAACATGAAGAAACGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAATCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAATAAAGCTGG < 1:174283/141‑1
GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGC < 1:823783/143‑1
AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGA > 1:80812/1‑143
AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCACCGCTTATTCGCACCTTACCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGCAAGACGGCCTGA > 2:29038/1‑143
ACATGAAGACAGGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAA < 2:767963/143‑1
AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTC < 2:460129/143‑1
TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACCGATAACAATACCGCCCTACAGAAAGCTGGCCGCAAAGTAACGCTGCCGCGca > 2:6521/1‑141
GACTGAGTCAGCCGAGAAGAATCTCCCCGCTTATTCGCACCTCCCCTAATGAAGTGAACCGCTTAGTCACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTT < 2:146491/143‑1
ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTc > 1:263642/1‑142
TGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGGCTAAA > 2:1075791/1‑143
GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAA < 1:206830/143‑1
AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAA > 2:742505/1‑143
AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTACTCGTTTAAAAA > 1:410976/1‑143
AGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCACTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGGATGACTGATAACAATACCGCCCTAAAGACAGCTGGCCTGAAAGTAAGGCTACCTCGCTTAAAAATCgt > 1:333021/1‑141
aGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGA < 2:304686/142‑1
CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGA < 1:135640/143‑1
GAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAA > 1:793234/1‑143
GAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGAGCACCCTTCTGGAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAA < 1:451925/143‑1
AGAATTTCCCCGCTTATTCGCACGTGCCCTAATGGAGTGAACCTCTTAGTAACAGGACAGATTCCGCAGGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTC < 2:91519/143‑1
GAATTTCCCCGCTTATTCCCACCTTCCCTCATGAAGTGAACCGCTTAGTAACATGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCT < 1:375552/143‑1
AATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGACGTTCTT > 1:629514/1‑143
CCCCGCTGATTCGCACCTGCCCGAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGA < 2:116252/143‑1
TATTCGAACCTTCCCTAATGAAGTGAACGTCTTAGGAACGGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGAC < 1:491835/143‑1
TTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAA < 1:1076335/143‑1
TTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAA < 2:601661/143‑1
TCGCACCTTCCCTGATGGAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAAC < 2:283421/143‑1
CCTTCCCTAATGCAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAACCATCA < 2:965883/143‑1
ACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/274088‑273955
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAACCATCA < NC_000913/710685‑710549
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
