Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F44 I0 R1
|
115 |
55.9 |
2109214 |
91.7% |
1934149 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC JC |
NC_000913 |
710,682 |
IS5 (–) +4 bp |
73.6% |
coding (41‑44/87 nt) |
uof ← |
RyhB‑regulated fur leader peptide |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
273955 = | NA (NA) | 36 (0.670) |
34/262 |
NT |
71.4% |
noncoding (1195/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
= 710685 |
14 (0.270) | coding (41/87 nt) |
uof |
RyhB‑regulated fur leader peptide |
| * |
? |
NC_000913 |
= 275149 | NA (NA) | 42 (0.780) |
33/262 |
NT |
74.4% |
noncoding (1/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
710682 = |
14 (0.270) | coding (44/87 nt) |
uof |
RyhB‑regulated fur leader peptide |
CGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/274087‑273955
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAACC < NC_000913/710685‑710553
CGCCTTAAATGGCGGAGAAACGGTCTAAATAGTCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGT < 2:4476/143‑1
GCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGCAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTG > 2:698402/1‑143
GCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCCTATTCGCACCTTCCCTGCTGAAGTa > 2:696371/1‑142
CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGA < 2:310739/143‑1
CTTAAATGGCGAAGAAACGGTCTAAATAGGCGGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAATCAGCCGAGAAGAATTTCCCCCCTTATTCGCACCTTCCCCAATAAAGTGAA > 2:640350/1‑143
AATGGCGAAGACACGGTCTAAATAGGCTGATTCAAGTCATTCACGGGAGAAACAATCGGCTCAAACACGAAGACATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGC < 2:573799/143‑1
ATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAACGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCT < 1:719167/143‑1
AAGGAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCAAAATGAAGTGAACCGCTTAGTAA < 2:923310/143‑1
AGAAGCGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATCAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAAC < 1:899950/143‑1
ACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGA > 1:57186/1‑143
ACGGTCTAAACAGGCTGATTCAAGGCATTGACGGGAGAAAAAATCGGCTCAAACATGAAGAACTGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGA < 1:852214/143‑1
CGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGAC < 1:878506/143‑1
CGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGAC > 1:899169/1‑143
TCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAcgccaca > 2:473165/1‑136
ATAGGCTGTTTTAAATCATTTACGGGAGATAAAATCGGCTCAAACATGAAGAAATGAAATGACGGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCG < 1:932249/143‑1
GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCAcg > 2:761265/1‑141
TGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGAC > 1:428428/1‑143
TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGCAGCATTTCCCCGCTTATTAGCACCTACACAAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGA > 1:255468/1‑143
acTTACCGAAGAAAAAATCGGCGCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATA < 1:234459/141‑1
ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCC < 1:687359/125‑1
ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCC > 2:687359/1‑125
AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTCAAG > 1:979433/1‑143
AAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAA < 2:531648/143‑1
gcCTCAACCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGG < 1:374908/141‑1
AAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCT > 1:987507/1‑143
ATGAAATGACTGGGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATCACACCCTAAATAAAGCTGGCCTGAAAGTAACGCTTC < 2:863749/143‑1
TGAAATGACTGCGGCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCC < 2:839261/143‑1
aaggGACTGAGCCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTC < 1:830836/139‑1
AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCG < 2:803824/143‑1
AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAA > 1:922263/1‑143
GTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCACGTTTAAAAAT > 2:821930/1‑143
TTCCCCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAG > 1:661602/1‑143
CCGCTTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACCGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGC > 2:432144/1‑143
TTATTCGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACCGGACAGATTCCGCATGACTGCTAACAATACCGCCCTAAAGAACGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTCCAGGACCCGGA > 2:708609/1‑143
TTATTCGCACCTTCCCTAATGAAGCAAACCGCATAGTAACAGGACAGATTCCGCATAACTGATAACAATACAGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCATCCTCGTTTAAAAATCCCGGAAGTTCTGCAGGAGCCGGA > 2:699388/1‑143
CGCACCTTCCCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAACC < 1:70321/143‑1
CGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/274087‑273955
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCATGACTGATAACAATACCGCCCTAAAGAAAGCTGGCCTGAAAGTAACGCTTCCTCGTTTAAAAATCCTGGAAGTTCTTCAGGAGCCGGACAACC < NC_000913/710685‑710553
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
