Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F91 I1 R1 26 61.7 2321240 90.8% 2107685 142.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,237,405 G→T intergenic (‑164/‑166) ycgB ← / → dadA PF04293 family protein YcgB/D‑amino acid dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,237,4050GT98.6% 213.5 / NA 72intergenic (‑164/‑166)ycgB/dadAPF04293 family protein YcgB/D‑amino acid dehydrogenase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base T (33/38);  minor base C (1/0);  total (34/38)
Fisher's exact test for biased strand distribution p-value = 4.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01

CTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAAGGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGATGTGATTAGATTATTATTCTTTTA  >  NC_000913/1237266‑1237544
                                                                                                                                            |                                                                                                                                           
ctctctGTGTGGAGCGCCTCATGTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATTCTGGATAAAAATGGc                                                                                                                                          <  2:979514/143‑1 (MQ=255)
ctctctGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGc                                                                                                                                          >  1:404722/1‑143 (MQ=255)
   tctGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGACTTTTATGCTGGATAAAAATGGCGtt                                                                                                                                       >  1:145520/1‑143 (MQ=255)
   tctGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAACTGGCGtt                                                                                                                                       >  1:775626/1‑143 (MQ=255)
      gtgttGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTcag                                                                                                                                    <  1:54857/143‑1 (MQ=255)
         tgGGGCACCTCCTTTCAAGCATAGTACGCCTGTTAAAAACCGCGTCGCCGGAGAATTTTTGTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTcagcag                                                                                                                                 <  2:210656/143‑1 (MQ=255)
          ggAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCTGCAgg                                                                                                                                >  2:1150297/1‑143 (MQ=255)
          ggAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTAATCTCACAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAgg                                                                                                                                <  1:316054/143‑1 (MQ=255)
            aGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGgag                                                                                                                              >  2:496581/1‑143 (MQ=255)
              agccTCATTTCAAGCATAGCGCCCCCGTTAAAATCCGCGTCGGCGGAGAAGTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGAt                                                                                                                            <  2:867240/141‑1 (MQ=255)
               aCCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCCGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATa                                                                                                                           <  1:1001859/143‑1 (MQ=255)
                 cTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGACTTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGAGGTTCAGCAGGAGATACt                                                                                                                         >  1:226223/1‑143 (MQ=255)
                  tCATTTCCAGCTTAGAACCCCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTa                                                                                                                        <  2:796753/143‑1 (MQ=255)
                  tCATTTCAAGTATAGACCACCTCCTAAAATCCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGATTGCTAC‑TAATCCGCTTCTGCCCCGTCTTTTGTGCTGGATAAAAATGGCGTTCAGCAGGAGATACTa                                                                                                                        <  2:826435/143‑1 (MQ=255)
                   cATTTCAAGTATAGAACGCCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCCTTGCGATTTCTTCTTCTCCGAGTGCCAC‑TAATCCGCTTCTGAACGGACTTTTAGCCTAGATAAAAATGGCGTTCAGCAGGAGATACTaa                                                                                                                       <  2:139486/143‑1 (MQ=255)
                            cATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCat                                                                                                              >  2:827810/1‑143 (MQ=255)
                              tacaaCACCTGCAAAAACCCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGGCGCCatat                                                                                                            <  1:691633/140‑1 (MQ=255)
                                     ccTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCa                                                                                                     <  1:496581/143‑1 (MQ=255)
                                      cTGTTAATAATCGCTTCGCCGGATAGTCTTTTTCTCTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGATCGGAATTTTATGCTGGATAAAAATGGCGTTTAGCAGGAGTTACTAAAGACGCCATATTGCCGCag                                                                                                    <  2:1035192/143‑1 (MQ=255)
                                       tGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCaga                                                                                                   <  1:478461/143‑1 (MQ=255)
                                         ttAAAAACCGCGTCGCCGGAGAATTATTTTCTTTGCGATTGCGTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGACATATCGCCGAagaca                                                                                                 >  1:931011/1‑141 (MQ=255)
                                            aaaaCCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAg                                                                                              <  2:145520/143‑1 (MQ=255)
                                             aaaCCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAgg                                                                                             <  1:561708/143‑1 (MQ=255)
                                             aaaCCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCACCACCGTCAgg                                                                                             >  2:996033/1‑143 (MQ=255)
                                                  gcgTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGAt                                                                                        <  1:416578/143‑1 (MQ=255)
                                                      cGCCGGAGACGTTTTTGCTTTTCGCTTTCTTATTATCAGAGTGCCAC‑TAATCCGCGTCTGAACGGAATTTTATGCTGGATAAAAATGGCGGTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGa                                                                                    <  2:209428/143‑1 (MQ=255)
                                                      cGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCATATTGCCAT‑TTATGCGCTTTTTTTTTTAATTTTTTTCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGa                                                                                    <  1:486011/143‑1 (MQ=255)
                                                      cGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGa                                                                                    <  1:912780/143‑1 (MQ=255)
                                                        ccGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TGCTCCACTTCTCAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGc                                                                                  <  1:842331/143‑1 (MQ=255)
                                                        ccGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGc                                                                                  <  2:340779/143‑1 (MQ=255)
                                                           gagcATTGTTTTCTTGGCGATTCCTCATTATCAGAGTGCCAC‑TAATCCGCTTCGGAACGGAATTTTATGCGGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAg                                                                               <  2:388059/143‑1 (MQ=255)
                                                             gaATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGATGGATAAAAATGGCGTTCAGCAGGAGATACTCAAGATGCCATATTGCGGCAGAGTCCGGGAGATGTGAGCCCGCt                                                                             >  2:689377/1‑143 (MQ=255)
                                                              aaTTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGCACGGAATTTTATGCTGAATAACAACGGCGGTCAGCGAGAGCTACTAAAGACGCTATATTGCCGCAGAGTCAGAGAGATGTGTGACAGcca                                                                            >  2:940315/1‑141 (MQ=255)
                                                                    ttgcTTTGCGGTTGCGTATTATCAGGGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGTTGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCTGGCTCAcatct                                                                      <  2:305918/140‑5 (MQ=255)
                                                                      tCTTTGCGATTTCTTATTATCAGAGTGCCACACAAACTGTTTC‑GATCGAAAACTAATTCTGGATAAAAATGGCGTTTATCATAATAGACTGAAACTTTCATATTGCCTCAGAGTAAGGGAGATCGGAGCCATCTCatcgcaaa                                                                    >  2:1074352/1‑136 (MQ=255)
                                                                        tttGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATaaaaa                                                                  >  1:610701/1‑143 (MQ=255)
                                                                          tGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCAACATAAAAAAg                                                                >  2:537572/1‑143 (MQ=255)
                                                                           gCGATTCCTTATTATCAGAGCGCCAC‑TAATCCGCATCTGAACGGAATTTTATGCGGGATAAAAATGGCGTTCAGCAGGAGATACGAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGc                                                               <  2:763987/143‑1 (MQ=255)
                                                                             gATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAACAAAGCCg                                                             >  1:337649/1‑143 (MQ=255)
                                                                                 tctcaatatCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATg                                                         <  1:792399/137‑1 (MQ=255)
                                                                                  cTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGt                                                        >  1:57184/1‑143 (MQ=255)
                                                                                  cTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCCCACCATAAAAAAGCCGCACGt                                                        >  2:949646/1‑143 (MQ=255)
                                                                                  cTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGAGAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGt                                                        <  1:787319/143‑1 (MQ=255)
                                                                                   tgattatCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTACAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGtt                                                       <  1:583756/141‑1 (MQ=255)
                                                                                     attatCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCGTAAAAAAGCCGCATGTTGa                                                     >  1:155878/1‑143 (MQ=255)
                                                                                       tatCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATACAAAAGCCGCATGTTGaat                                                   >  1:1112081/1‑143 (MQ=255)
                                                                                        atCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAACTGGCGTTCAGCAGGAGATACCAACGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCCTAAAAAAGCCGCATGTTggaaa                                                  >  2:138802/1‑139 (MQ=255)
                                                                                           agagTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATCAACAAGCCGCATGTTGAataata                                               >  1:517201/1‑143 (MQ=255)
                                                                                                gCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTc                                          <  2:892704/143‑1 (MQ=255)
                                                                                                 ccAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCa                                         >  2:650656/1‑143 (MQ=255)
                                                                                                   aC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAAc                                       >  1:413505/1‑143 (MQ=255)
                                                                                                      tAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCAACATACAAAAGCCGCATGTCGAATAATATTTTCAACTg                                     >  2:1119800/1‑143 (MQ=255)
                                                                                                       aaTCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGa                                    >  1:616333/1‑143 (MQ=255)
                                                                                                       aaTCCGCGTCGTAACGGAATTTTATGCTGGATAATAATGGCGTTCAGCAGGAGATACTAACGACGCCGTATTGCCGCAGAGGCAGGGAGATGTGAGTCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGa                                    <  2:188319/143‑1 (MQ=255)
                                                                                                         tCCGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGACTAATATTTTCAACTGAGt                                  >  1:695851/1‑143 (MQ=255)
                                                                                                          ccGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAgg                                                                                             >  1:763467/1‑83 (MQ=255)
                                                                                                          ccGCTTCTGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAgg                                                                                             <  2:763467/83‑1 (MQ=255)
                                                                                                            gCTTCGGAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTAt                               <  1:853908/143‑1 (MQ=255)
                                                                                                                  gAACGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAGAAAAGCCGCATGTTGAATAATATATTCAACTGAGTTGTCAAGAt                         >  2:904744/1‑143 (MQ=255)
                                                                                                                   aaCGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGAtg                        >  1:270225/1‑143 (MQ=255)
                                                                                                                   aaCGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGCGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATCTTTTCAACTGAGTTATCAAGAtg                        >  1:580384/1‑143 (MQ=255)
                                                                                                                     cGGAATTTTATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTAAACTGAGTTATCAAGAtgtg                      >  2:5394/1‑143 (MQ=255)
                                                                                                                      ggAATTTTATGCTGGATAAAAATGGCGTGCAGCAGAAGATACTAAAGACGCCATATTGCCGCAAAGTCAGGGCGATGCGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGATGTga                     <  1:1038392/143‑1 (MQ=255)
                                                                                                                          ttttATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGCTGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTCTCAACATGTggttag                 >  2:715327/1‑143 (MQ=255)
                                                                                                                          ttttATGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGATGTgattag                 >  1:344171/1‑143 (MQ=255)
                                                                                                                             gaggccggATAAAAATGGCGGTCAGCAGGAGATACGAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATCATATTTTCAACTGAGTTATCAAGATGTgattagatt              <  1:436746/137‑1 (MQ=255)
                                                                                                                             gaTGCTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGATGTgattagatt              <  1:821984/142‑1 (MQ=255)
                                                                                                                                 cTGGATAAAAATGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGATGTGATTAGattatta          >  1:370221/1‑143 (MQ=255)
                                                                                                                                   ggATAAATATGTTGTTCGGCAGGAGATACTAAAGAAGCGATATTGCAGAAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGAATGTTGAATAATATTGTCAACTGAGTTATCAAGATGTGATTAGattattatt        <  1:600317/143‑1 (MQ=255)
                                                                                                                                      tAAAAATGGCGTCCAGCCGGGGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGATGTGATTAGATTATTATTCtt     <  1:1062486/143‑1 (MQ=255)
                                                                                                                                       aaaaaTGGCGGTTAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTAGCAAGATGTGATTAGATTATTATTCttt    <  2:155757/143‑1 (MQ=255)
                                                                                                                                         aaaTGGCGTTCAGCAGGAGATACGAAAGACGCCATATTGCCGCAGAGTCAGTGTGTGGCTAGCCATCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGATGTGATTAGATTATTATTCTTTTa  <  1:1150297/143‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
CTCTCTGTGTGGAGCACCTCATTTCAAGCATAGAACACCTGTTAAAAACCGCGTCGCCGGAGAATTTTTTTCTTTGCGATTTCTTATTATCAGAGTGCCAC‑TAATCCGCTTCTGAACGGAATTTTATGCTGGATAAAAAGGGCGTTCAGCAGGAGATACTAAAGACGCCATATTGCCGCAGAGTCAGGGAGATGTGAGCCAGCTCACCATAAAAAAGCCGCATGTTGAATAATATTTTCAACTGAGTTATCAAGATGTGATTAGATTATTATTCTTTTA  >  NC_000913/1237266‑1237544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A