Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A22 F68 I1 R1 31 72.2 3191514 95.4% 3044704 126.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC BS168_reference_genome 1,716,709 Δ24 bp coding (217‑240/765 nt) sigD → RNA polymerase sigma‑28 factor (sigma‑D)

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ BS168_reference_genome 1716709 1716732 24 43 [0] [0] 43 sigD RNA polymerase sigma‑28 factor (sigma‑D)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BS168_reference_genome = 17167080 (0.000)43 (0.570) 26/246 0.9 100% coding (216/765 nt) sigD RNA polymerase sigma‑28 factor (sigma‑D)
?BS168_reference_genome 1716733 = 0 (0.000)coding (241/765 nt) sigD RNA polymerase sigma‑28 factor (sigma‑D)

GATK/CNVnator alignment

N/A