Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A24 F31 I3 R1
|
19 |
130.1 |
4745868 |
94.1% |
4465861 |
139.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
2,594,214 |
C→A |
R549L (CGT→CTT) |
tmcA ← |
elongator methionine tRNA (ac4C34) acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 2,594,214 | 0 | C | A | 96.0%
| 443.4
/ ‑0.3
| 126 | R549L (CGT→CTT) | tmcA | elongator methionine tRNA (ac4C34) acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (1/4); new base A (61/60); total (62/64) |
| Fisher's exact test for biased strand distribution p-value = 3.65e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 126 total aligned reads displayed.
AAGCAACCTAACGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGACGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCGTTGCCAGAAACGCCAT > NC_000913_3_pae_tpiA/2594067‑2594360
|
aaGCAACCTAACGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGt < 2:216785/150‑1 (MQ=255)
aGCAACCTAACGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTa > 2:1412143/1‑150 (MQ=255)
cAACCTAACGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTaaa < 4:887761/150‑1 (MQ=255)
aaCCTAACGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAAc > 4:113066/1‑150 (MQ=255)
cTAACGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGt < 4:561828/150‑1 (MQ=255)
tAACGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTa > 2:67313/1‑150 (MQ=255)
aaCGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTaa < 2:754909/150‑1 (MQ=255)
gacgTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGc < 2:1438484/150‑1 (MQ=255)
cgTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTc > 2:1380767/1‑150 (MQ=255)
gTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCa < 2:297133/150‑1 (MQ=255)
tAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACg > 3:249393/1‑150 (MQ=255)
aaTAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGt > 4:281264/1‑150 (MQ=255)
tAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTc < 2:687567/150‑1 (MQ=255)
aGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTca > 1:954036/1‑150 (MQ=255)
aTGAGCGACAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTg < 2:1288133/150‑1 (MQ=255)
tGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGt > 4:131415/1‑150 (MQ=255)
tGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGt < 3:281264/150‑1 (MQ=255)
aGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGttt > 3:825701/1‑150 (MQ=255)
gCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTa < 2:621464/150‑1 (MQ=255)
cGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCATGTTca > 1:1137674/1‑137 (MQ=255)
cGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCATGTTca < 2:1137674/137‑1 (MQ=255)
cGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTAc < 1:1380767/150‑1 (MQ=255)
gAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTAcc < 3:575230/150‑1 (MQ=255)
gAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTAcc < 3:117347/150‑1 (MQ=255)
aaaGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCCTCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTAccc < 1:1121363/150‑1 (MQ=255)
aaaGCAAAACCGGCCAGTTCAAGCCAGTCGTCGCCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACAGCCCGAGAGCTCGCGCATCGCGCAGTAAACGGTAACGCTCACGTTCAGCCAGCTGTTTAccc > 4:276462/1‑150 (MQ=255)
aGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGc < 2:118898/150‑1 (MQ=255)
aGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGc < 2:1278332/150‑1 (MQ=255)
caacgccGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGACTCAACAAAAAGGCTTTCGCCATTGCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCAt < 1:1453227/145‑1 (MQ=255)
cAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTca > 4:876302/1‑131 (MQ=255)
cAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTca < 3:876302/131‑1 (MQ=255)
cAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCATGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCAt < 1:850715/150‑1 (MQ=255)
aaaaCCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATc > 2:1107751/1‑150 (MQ=255)
aaaCCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGCGCTTGCGCATCGCTAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCa > 1:594344/1‑150 (MQ=255)
aaCCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCAc > 1:611256/1‑150 (MQ=255)
cGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTaa < 3:496568/113‑1 (MQ=255)
cGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTaa > 4:496568/1‑113 (MQ=255)
cGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCa > 3:545625/1‑150 (MQ=255)
gCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATc > 2:332243/1‑150 (MQ=255)
cAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCgg < 2:604450/150‑1 (MQ=255)
cAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACa > 1:269747/1‑150 (MQ=255)
cAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACa > 4:849566/1‑150 (MQ=255)
cAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACa > 1:158407/1‑150 (MQ=255)
ccAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAgcgc > 3:563454/1‑150 (MQ=255)
tcgtcAGAAAGGATGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGcc < 2:1276968/150‑1 (MQ=255)
cAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGt > 1:623571/1‑131 (MQ=255)
aGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGtata > 4:281756/1‑150 (MQ=255)
aGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGtata > 1:1010019/1‑150 (MQ=255)
gAAGGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGACGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGACGTATAg > 3:824832/1‑150 (MQ=255)
gAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAg < 3:685803/150‑1 (MQ=255)
ggCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCgct < 1:955160/150‑1 (MQ=255)
gCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCgctg < 3:131415/150‑1 (MQ=255)
aTCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTAcc < 1:136439/102‑1 (MQ=255)
aTCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCgctgct < 2:1010019/150‑1 (MQ=255)
aTCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCgctgct > 4:322897/1‑150 (MQ=255)
aTCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGATAACAGCGCCATCGCCGTATAGCAACCgctgct > 2:830422/1‑150 (MQ=255)
aTCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCCCAGCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCgctgct < 1:92097/150‑1 (MQ=255)
tCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGctgctg < 4:563454/150‑1 (MQ=255)
tCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGctgctg < 1:891591/150‑1 (MQ=255)
tCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGctgctg < 3:113066/150‑1 (MQ=255)
tttAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCt > 2:209999/1‑150 (MQ=255)
aGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTcc > 4:714658/1‑150 (MQ=255)
tGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGACGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCg < 1:1412143/150‑1 (MQ=255)
gATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGACGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCgat < 2:901307/150‑1 (MQ=255)
aTCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTcagcca > 1:417625/1‑80 (MQ=255)
aTCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTcagcca < 2:417625/80‑1 (MQ=255)
cAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGtat > 2:844395/1‑123 (MQ=255)
cAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGtat < 1:844395/123‑1 (MQ=255)
aCAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGc < 1:34440/89‑1 (MQ=255)
aCAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGc > 2:34440/1‑89 (MQ=255)
aCAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTa < 4:825701/150‑1 (MQ=255)
cAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTAc < 4:656383/150‑1 (MQ=255)
cAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTAc < 1:1196614/150‑1 (MQ=255)
aGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTAcc > 3:704714/1‑150 (MQ=255)
ggAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTAccc > 4:621511/1‑150 (MQ=255)
gAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCgctgc > 1:1005483/1‑129 (MQ=255)
gAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGATAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCa > 1:312906/1‑150 (MQ=255)
aaGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCAt > 1:678247/1‑150 (MQ=255)
tCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCAcc < 3:322897/150‑1 (MQ=255)
cGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCa < 2:1087416/150‑1 (MQ=255)
gCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAg > 3:648067/1‑150 (MQ=255)
gCCATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAg > 2:572637/1‑150 (MQ=255)
ccATTCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCCGc > 1:1001540/1‑150 (MQ=255)
cgtttaCTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGcac > 1:1341478/6‑150 (MQ=255)
tCCACTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACaa > 1:1221670/1‑150 (MQ=255)
aCTGCGCGAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAAc > 3:729954/1‑150 (MQ=255)
ttcgcgAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCg > 1:649163/3‑150 (MQ=255)
gcgAGAGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAg < 1:492034/150‑1 (MQ=255)
gagaGCTTGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCg > 3:565699/1‑150 (MQ=255)
gCTTGCGCACCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCGATCCGCACCAGCAAAAAACCGCAGCGTTGc < 2:752164/150‑1 (MQ=255)
ttGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGc > 2:136912/1‑89 (MQ=255)
ttGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGc < 1:136912/89‑1 (MQ=255)
ttGCGCATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCGTTGCCa > 3:785669/1‑150 (MQ=255)
cATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCGTTGCCAGAAAc < 4:561782/150‑1 (MQ=255)
cATCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCGTTGCCAGAAAc > 3:108565/1‑150 (MQ=255)
tCGCGAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCACCCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCGTTGCCAGAAACGc < 2:611256/150‑1 (MQ=255)
cgcgAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCAc < 2:88419/51‑1 (MQ=255)
cgAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGc > 1:1015623/1‑120 (MQ=255)
cgAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCGTTGCCAGAAACGCCAt > 2:1452128/1‑150 (MQ=255)
cgAAGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACGCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCGTTGCCAGAAACGCCAt > 4:167766/1‑150 (MQ=255)
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AAGCAACCTAACGACGTTAATAGCGGACGATGAGCGAAAGCAAAACCGGCCAGTTCAAGCCAGTCGTCGTCAGAAAGGACGGCATCGTTTAGTGGATCAACAGGAAGCGTTTCGCCATTCCACTGCGCGAGAGCTTGCGCATCGCGACGTAAACGGTAATGCTCACGTTCAGCCAGCTGTTTACCCGCATCACTCATCGGTAACAGCGCCATCGCCGTATAGCAACCGCTGCTGGCTTCCCGATGATTACCCATCCGCACCAGCACAAAACCGCAGCGTTGCCAGAAACGCCAT > NC_000913_3_pae_tpiA/2594067‑2594360
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
