Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F1 I2 R1 92 50.6 2362856 94.3% 2228173 111.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,138,483 T→C T14A (ACA→GCA)  gss ← glutathionylspermidine amidase and glutathionylspermidine synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,138,4830TC100.0% 276.8 / NA 72T14A (ACA→GCA) gssglutathionylspermidine amidase and glutathionylspermidine synthetase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/36);  total (36/36)

GTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGTCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGAC  >  NC_000913/3138358‑3138614
                                                                                                                             |                                                                                                                                   
gtgGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGT‑ATCTGGAGAGTAGATTGCTACCCCACCTGGGGGGTTGCCCCATAATGCCCCGAACAGGGCAt                                                                                                                       >  1:898221/1‑139 (MQ=255)
   gCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATcc                                                                                                                     >  2:720472/1‑139 (MQ=255)
    cccATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGaa                                                                                                                               <  2:477925/128‑1 (MQ=255)
    cccATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGaa                                                                                                                               >  1:477925/1‑128 (MQ=255)
        tatatTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCctggct                                                                                                                >  1:950850/1‑139 (MQ=255)
             tcgtcgtcgATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCg                                                                                                           <  2:105120/139‑1 (MQ=255)
                          aGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCtcat                                                                                              <  2:950850/139‑1 (MQ=255)
                              aCGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACt                                                                                          <  1:654577/139‑1 (MQ=255)
                              aCGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACt                                                                                          <  2:904667/139‑1 (MQ=255)
                               cGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGaa                                                                                                                               >  1:115321/1‑101 (MQ=255)
                               cGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGaa                                                                                                                               <  2:115321/101‑1 (MQ=255)
                                ggAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACttt                                                                                        >  1:587271/1‑139 (MQ=255)
                                ggAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACttt                                                                                        >  2:1034408/1‑139 (MQ=255)
                                 gAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTa                                                                                       >  2:714137/1‑139 (MQ=255)
                                   aTACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTAcc                                                                                     <  1:270805/139‑1 (MQ=255)
                                    tACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGa                                                                                                                                >  1:913557/1‑95 (MQ=255)
                                    tACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGa                                                                                                                                <  2:913557/95‑1 (MQ=255)
                                       ggCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTa                                                                                 >  1:590175/1‑139 (MQ=255)
                                        gCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTaa                                                                                <  2:596754/139‑1 (MQ=255)
                                         cGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGt                                                                                                             <  2:629748/109‑1 (MQ=255)
                                         cGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGt                                                                                                             >  1:629748/1‑109 (MQ=255)
                                         cGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTg                                                                                                   >  1:49898/1‑119 (MQ=255)
                                         cGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTg                                                                                                   <  2:49898/119‑1 (MQ=255)
                                           tCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCt                                                                                                 >  2:810380/1‑119 (MQ=255)
                                           tCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCt                                                                                                 <  1:810380/119‑1 (MQ=255)
                                             aTCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATa                                                                           <  1:714137/139‑1 (MQ=255)
                                              tCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATAc                                                                          <  1:1034408/139‑1 (MQ=255)
                                                          tGCGGATCGAGAGAACTATAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGt                                                              >  2:438901/1‑139 (MQ=255)
                                                           gCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGtt                                                             <  1:210082/139‑1 (MQ=255)
                                                            cGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATAc                                                                          >  2:647865/1‑125 (MQ=255)
                                                            cGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATAc                                                                          <  1:647865/125‑1 (MQ=255)
                                                            cGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCt                                                                     >  1:2344/1‑130 (MQ=255)
                                                            cGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCt                                                                     <  2:2344/130‑1 (MQ=255)
                                                            cGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTg                                                            >  1:902035/1‑139 (MQ=255)
                                                            cGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTg                                                            >  1:777329/1‑139 (MQ=255)
                                                            cGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTg                                                            >  2:967979/1‑139 (MQ=255)
                                                             ggATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTgg                                                           <  2:161799/139‑1 (MQ=255)
                                                                tCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGt                                                        <  2:777329/139‑1 (MQ=255)
                                                                 cGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTa                                                       >  2:56568/1‑139 (MQ=255)
                                                                       aaCTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAAttgtt                                                 <  1:1028768/139‑1 (MQ=255)
                                                                       aaCTATAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAAttgtt                                                 <  1:438901/139‑1 (MQ=255)
                                                                         cTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATtgttgt                                               >  1:263066/1‑139 (MQ=255)
                                                                          tGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCTTCACTTTACCTTTAACAAt                                                                            >  1:807519/1‑109 (MQ=255)
                                                                          tGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAAt                                                                            <  2:807519/109‑1 (MQ=255)
                                                                          tGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTtgtg                                              <  2:902035/139‑1 (MQ=255)
                                                                          tGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTtgtg                                              <  1:967979/139‑1 (MQ=255)
                                                                             aaTCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCtcat                                                                                              <  1:629976/88‑1 (MQ=255)
                                                                             aaTCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCtcat                                                                                              >  2:629976/1‑88 (MQ=255)
                                                                                    agagTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTAc                                    <  2:898221/139‑1 (MQ=255)
                                                                                    agagTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTAc                                    >  2:547691/1‑139 (MQ=255)
                                                                                      agTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTACCt                                  >  2:636377/1‑139 (MQ=255)
                                                                                                tACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTtgtg                                              >  2:959383/1‑117 (MQ=255)
                                                                                                tACCCCACCTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTtgtg                                              <  1:959383/117‑1 (MQ=255)
                                                                                                  ccccACCTGGGGCGTTGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACGACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACAt                      >  1:786359/1‑139 (MQ=255)
                                                                                                       ccTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTa                                                                                 >  2:971450/1‑75 (MQ=255)
                                                                                                       ccTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTa                                                                                 <  1:971450/75‑1 (MQ=255)
                                                                                                       ccTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAAc                                                                               >  2:485797/1‑77 (MQ=255)
                                                                                                       ccTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAAc                                                                               <  1:485797/77‑1 (MQ=255)
                                                                                                       ccTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTtgtg                                              >  2:1070049/1‑110 (MQ=255)
                                                                                                       ccTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTtgtg                                              <  1:1070049/110‑1 (MQ=255)
                                                                                                       ccTGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAAcc                 <  1:547691/139‑1 (MQ=255)
                                                                                                         tGGGGCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCgg               >  2:432555/1‑139 (MQ=255)
                                                                                                            ggCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAg                                                                  >  2:1152437/1‑85 (MQ=255)
                                                                                                            ggCGTAGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAg                                                                  <  1:1152437/85‑1 (MQ=255)
                                                                                                                 aGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAAttgtt                                                 >  2:1041427/1‑97 (MQ=255)
                                                                                                                 aGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAAttgtt                                                 <  1:1041427/97‑1 (MQ=255)
                                                                                                                 aGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTtgtg                                              >  1:975618/1‑100 (MQ=255)
                                                                                                                 aGCCCAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTtgtg                                              <  2:975618/100‑1 (MQ=255)
                                                                                                                    ccAATAATGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAg    <  1:720472/139‑1 (MQ=255)
                                                                                                                      aataatGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACtt                                                                                         <  1:40654/52‑1 (MQ=255)
                                                                                                                      aataatGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACtt                                                                                         >  2:40654/1‑52 (MQ=255)
                                                                                                                      aataatGCCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGAc  >  2:892059/1‑139 (MQ=255)
                                                                                                                             |                                                                                                                                   
GTGGCCCATATATTCGTCGTCGATATAGCTACGGAATACGGCGTCATCTTCGTATTCCTGCGGATCGAGAGAACTGTAATCTGAAGAGTAGATTGCTACCCCACCTGGGGCGTAGCCCAATAATGTCCCGAACGGGGCATCCTGGCTGGTCGTTCCTTTGCTCATCACTTTACCTTTAACAATACAACCTAAGCAGTTGGCGTAATTGTTGTGCTCTGATTACCTGCTCAGCGACATTAACCGGACAGAGGTCAGAC  >  NC_000913/3138358‑3138614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A