Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I2 R1
|
92 |
50.6 |
2362856 |
94.3% |
2228173 |
111.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,478,883 |
G→A |
A575A (GCC→GCT) |
kefB ← |
potassium:proton antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,478,883 | 0 | G | A | 100.0%
| 237.0
/ NA
| 67 | A575A (GCC→GCT) | kefB | potassium:proton antiporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (33/34); total (33/34) |
GCCGGGCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCA > NC_000913/3478749‑3479016
|
gCCGGGCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCtt > 1:587432/1‑139 (MQ=255)
gggCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTccc > 2:654015/1‑139 (MQ=255)
gggCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTccc > 1:730692/1‑139 (MQ=255)
tGCGCCCGCAATAAAACGTTTTCGGATTGCCGTCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCga < 2:25252/139‑1 (MQ=255)
cccGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGaaa > 2:623019/1‑139 (MQ=255)
ccGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAAt < 2:152529/139‑1 (MQ=255)
cGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAAtt > 1:552078/1‑139 (MQ=255)
cAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTg < 1:351213/139‑1 (MQ=255)
aTAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa < 1:597027/139‑1 (MQ=255)
aTAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa < 2:552078/139‑1 (MQ=255)
aCGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTa < 2:652785/139‑1 (MQ=255)
ttCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgc < 2:654134/139‑1 (MQ=255)
ttCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgc < 2:587432/139‑1 (MQ=255)
ttGCCGTCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGTTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGAGAGAAATTTGTACGGTATCGgcatgcat < 2:730692/139‑1 (MQ=255)
ttGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgcatgcat > 1:186186/1‑139 (MQ=255)
cTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATg < 2:106944/139‑1 (MQ=255)
ccTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGctct > 2:1046704/1‑139 (MQ=255)
tACTCAAATTCATCCCAGCCGTCGAGCTGGCGTCGCTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCgca > 1:319828/1‑139 (MQ=255)
tACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCga > 1:476459/1‑96 (MQ=255)
tACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCga < 2:476459/96‑1 (MQ=255)
tACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa < 1:702702/106‑1 (MQ=255)
tACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGAGCGAGAAATTTGTa > 2:702702/1‑106 (MQ=255)
aCTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCgcag > 2:348930/1‑139 (MQ=255)
cAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCAt < 1:623019/139‑1 (MQ=255)
cATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATc > 2:300557/1‑103 (MQ=255)
cATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATc < 1:300557/103‑1 (MQ=255)
cATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCat > 1:792707/1‑139 (MQ=255)
tCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa > 2:740195/1‑94 (MQ=255)
tCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa < 2:99443/94‑1 (MQ=255)
tCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa > 1:99443/1‑94 (MQ=255)
tCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa < 1:740195/94‑1 (MQ=255)
tCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAg > 1:193788/1‑119 (MQ=255)
tCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAg < 2:193788/119‑1 (MQ=255)
tCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCatat > 2:101998/1‑139 (MQ=255)
gCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa < 2:928673/89‑1 (MQ=255)
gCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTa > 1:928673/1‑89 (MQ=255)
gCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAgg > 1:284950/1‑139 (MQ=255)
gCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAgg > 2:568435/1‑139 (MQ=255)
gTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAggcgg < 2:825419/139‑1 (MQ=255)
tCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCTCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAggcggc > 1:676188/1‑139 (MQ=255)
cAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGa < 2:479801/139‑1 (MQ=255)
ggCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTa > 1:288581/1‑83 (MQ=255)
ggCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTa < 2:288581/83‑1 (MQ=255)
tcgtTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGt < 1:348930/139‑1 (MQ=255)
ttCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgc < 1:478656/81‑1 (MQ=255)
ttCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgc > 2:478656/1‑81 (MQ=255)
ttCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTgc > 2:497203/1‑139 (MQ=255)
tCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTgcg < 1:654015/139‑1 (MQ=255)
gttgCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGcgctcg < 2:676188/139‑1 (MQ=255)
ttgCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGcgctcgc < 2:792707/139‑1 (MQ=255)
gCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgc > 1:876261/1‑73 (MQ=255)
gCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGgc < 2:876261/73‑1 (MQ=255)
tttCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGa < 1:595272/116‑1 (MQ=255)
tttCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGa > 2:595272/1‑116 (MQ=255)
tttCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTgcg > 2:877188/1‑129 (MQ=255)
tttCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTgcg < 1:877188/129‑1 (MQ=255)
tCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTg < 2:24079/42‑1 (MQ=255)
tCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTg > 1:24079/1‑42 (MQ=255)
tCACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCt > 2:1070002/1‑139 (MQ=255)
cACGCTGGAAAATCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGTAGTTGCGCTCGCTGTGCCTg > 2:71885/1‑139 (MQ=255)
aaaTCTCTTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGatg < 1:1070002/139‑1 (MQ=255)
tctTCCAGTTCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGatgcatgc < 2:1061574/139‑1 (MQ=255)
ttCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATg < 1:1069519/96‑1 (MQ=255)
ttCGCGTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATg > 2:1069519/1‑96 (MQ=255)
cgcgTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGAc < 2:284950/139‑1 (MQ=255)
cgcgTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGAc > 1:978020/1‑139 (MQ=255)
cgTCGAGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCa > 1:792034/1‑139 (MQ=255)
|
GCCGGGCATTTTGCGCCCGCAATAAAACGTTTTCGGATTGCCATCTTTACCCTCTACTCAAATTCATCCCAGCCGTCCAGCTGGCGTCGTTCTTGTTGCATTTCACGCTGGAAAATCTCTTCCAGTTCGCGTCGGGCTTCCCTGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCA > NC_000913/3478749‑3479016
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
