Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F1 I2 R1
|
67 |
36.0 |
1614110 |
95.1% |
1535018 |
114.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,523,413 |
T→C |
T191T (ACA→ACG) |
xapB ← |
xanthosine transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,523,413 | 0 | T | C | 100.0%
| 106.5
/ NA
| 30 | T191T (ACA→ACG) | xapB | xanthosine transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (16/14); total (16/14) |
GATTACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGATGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATGCAGCAGGCT > NC_000913/2523289‑2523535
|
gATTACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCtttttt > 2:606782/1‑139 (MQ=255)
tACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGTAGGCATCCAGACCCGGCTTGCTGGCAAGCGACGTGGTCGCTTTTTtctc < 2:522166/139‑1 (MQ=255)
cAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGc > 2:564320/1‑139 (MQ=255)
gTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGa < 2:234613/139‑1 (MQ=255)
gTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCt < 1:688117/139‑1 (MQ=255)
cAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCaaa < 1:52153/139‑1 (MQ=255)
gaCCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCTGAATCTTCGGCAAAGTCAgcgc > 2:502373/2‑139 (MQ=255)
cACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGc < 1:774227/112‑1 (MQ=255)
cACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGc > 2:774227/1‑112 (MQ=255)
cACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAgcgc > 2:251385/1‑139 (MQ=255)
cccAGCATCATGGCACGGAGGAAAAAGATGGACATGCGTGGATTTTGAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGATTTTTTCTCCGCAACCGGAATCTTCGTCAAAGCCAGCGCAt > 1:187867/1‑139 (MQ=255)
aGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCt < 1:57958/96‑1 (MQ=255)
aGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCt > 2:57958/1‑96 (MQ=255)
tGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGAcag > 2:704366/1‑139 (MQ=255)
cAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCa > 1:374411/1‑125 (MQ=255)
cAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCa < 2:374411/125‑1 (MQ=255)
tGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCgg < 1:438970/138‑1 (MQ=255)
tGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCgg > 2:438970/1‑138 (MQ=255)
gCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGAcg > 1:42070/1‑139 (MQ=255)
gCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGAcg < 2:798098/139‑1 (MQ=255)
gATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCAcc < 2:501030/124‑1 (MQ=255)
gATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCACAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCAcc > 1:501030/1‑124 (MQ=255)
cACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCg < 1:148842/56‑1 (MQ=255)
cACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCg > 2:148842/1‑56 (MQ=255)
cACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTc > 2:127235/1‑139 (MQ=255)
aaGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAAtt < 1:127235/139‑1 (MQ=255)
cAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATgc < 1:564320/139‑1 (MQ=255)
gCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATGCAGCAGGCt > 2:278791/1‑139 (MQ=255)
tGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGc < 2:22192/47‑1 (MQ=255)
tGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGc > 1:22192/1‑47 (MQ=255)
|
GATTACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGATGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATGCAGCAGGCT > NC_000913/2523289‑2523535
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
