Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F1 I1 R1	77	35.1	1569012	96.6%	1515665	112.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,523,413	T→C	T191T (ACA→ACG)	xapB ←	xanthosine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,523,413	0	T	C	100.0%	120.3 / NA	32	T191T (ACA→ACG)	xapB	xanthosine transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (17/15); total (17/15)

GTAGGAACGGATTACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGATGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATGCAGCAGGCTTACTGCCCACATC  >  NC_000913/2523280‑2523548

gTAGGAACGGATTACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCATGCTGGCAAGCGACGTGGt                                                                                                                                    >  1:390673/1‑139 (MQ=255)

      aCGGATTACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCttt                                                                                                                              >  1:602390/1‑139 (MQ=255)

         gATTACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCtttttt                                                                                                                           >  1:249877/1‑139 (MQ=255)

            tACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTtctc                                                                                                                        >  2:557176/1‑139 (MQ=255)

               cAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGc                                                                                                                     >  2:86808/1‑139 (MQ=255)

                    aCGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCg                                                                                                                >  1:629061/1‑139 (MQ=255)

                          gTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCt                                                                                                          <  2:602390/139‑1 (MQ=255)

                                    gTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGt                                                                                                >  2:37766/1‑139 (MQ=255)

                                       ccGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAg                                                                                             <  1:657242/139‑1 (MQ=255)

                                       ccGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAg                                                                                             >  2:425638/1‑139 (MQ=255)

                                          cACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGt                                                                                                >  1:695395/1‑133 (MQ=255)

                                          cACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGt                                                                                                <  2:695395/133‑1 (MQ=255)

                                          cACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAgcgc                                                                                          >  1:563236/1‑139 (MQ=255)

                                          cACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAgcgc                                                                                          >  1:738918/1‑139 (MQ=255)

                                          cACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGAACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAgcgc                                                                                          >  1:633152/1‑139 (MQ=255)

                                               aGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGACAAAGTCAGCGCATAAg                                                                                     >  1:706465/1‑139 (MQ=255)

                                                         cAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGACAAAGTCAGCGCATAAGCCGAcagcag                                                                           <  2:706465/139‑1 (MQ=255)

                                                          aaaGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAACAGACagcagc                                                                          >  1:754274/1‑139 (MQ=255)

                                                               ggAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGa                                                                     <  1:37766/139‑1 (MQ=255)

                                                                   aaaGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCa                                                                 <  2:629061/139‑1 (MQ=255)

                                                                       aTGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCgg                                                             <  2:249877/139‑1 (MQ=255)

                                                                       aTGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCgg                                                             <  2:134868/139‑1 (MQ=255)

                                                                                 gTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGAtata                                                   <  2:326511/139‑1 (MQ=255)

                                                                                                gCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGactact                                    <  2:563236/139‑1 (MQ=255)

                                                                                                 cACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCgg                                                             <  1:711641/113‑1 (MQ=255)

                                                                                                 cACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCgg                                                             >  2:711641/1‑113 (MQ=255)

                                                                                                         cATCCAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAg                           <  1:86808/139‑1 (MQ=255)

                                                                                                             cAGACCCAGCTTGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATgc                       <  2:738918/139‑1 (MQ=255)

                                                                                                                        tGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGAcg                                                          >  2:206561/1‑93 (MQ=255)

                                                                                                                        tGCTGGCAAGCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGAcg                                                          <  1:206561/93‑1 (MQ=255)

                                                                                                                                 gCGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATGCAGCAGGCTTACTGCCCACAt   <  2:390673/139‑1 (MQ=255)

                                                                                                                                  cGACGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATGCAGCAGGCTTACTGCCCACATc  >  1:591018/1‑139 (MQ=255)

GTAGGAACGGATTACCAAAAACGTTGGTAATTTGCAGTACCGCACCCAGCATCATGGCAAAGAGGAAAAAGATGGCCATGCGTGGATTTTTAAACAGCACGAAGGCATCCAGACCCAGCTTGCTGGCAAGCGATGTGGTCGCTTTTTTCTCCGCAACCGGAATCTTCGGCAAAGTCAGCGCATAAGCCGACAGCAGCAATGACGCACCGGACGCGATATACAGCTGCAGACTACTCAATTCCAGATGCAGCAGGCTTACTGCCCACATC  >  NC_000913/2523280‑2523548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A