Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I1 R1	83	73.5	3575638	92.3%	3300313	107.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,928,356	C→T	A416A (GCG→GCA)	viaA ←	stimulator of RavA ATPase activity, von Willebrand factor domain protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,928,356	0	C	T	100.0%	289.6 / NA	83	A416A (GCG→GCA)	viaA	stimulator of RavA ATPase activity, von Willebrand factor domain protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (42/41); total (42/41)

CGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGATGCCTTGTGGGCCTGA  >  NC_000913/3928222‑3928487

cgcATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCAt                                                                                                                                 >  2:646250/1‑139 (MQ=255)

cgcATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCAt                                                                                                                                 <  2:577104/139‑1 (MQ=255)

 gcATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATc                                                                                                                                <  1:194771/139‑1 (MQ=255)

          cGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCaaa                                                                                                                       <  1:149359/139‑1 (MQ=255)

          cGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCaaa                                                                                                                       <  2:1666717/139‑1 (MQ=255)

               ttGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCAtt                                                                                                                  >  1:1768317/1‑139 (MQ=255)

               ttGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCAtt                                                                                                                  <  1:391099/139‑1 (MQ=255)

               ttGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCAtt                                                                                                                  >  1:1119602/1‑139 (MQ=255)

                 gCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTcc                                                                                                                <  1:1410514/139‑1 (MQ=255)

                 gCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTcc                                                                                                                >  2:606351/1‑139 (MQ=255)

                 gCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTcc                                                                                                                <  1:305525/139‑1 (MQ=255)

                  ccGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTccc                                                                                                               >  2:1628317/1‑139 (MQ=255)

                       tgCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCtt                                                                                                          >  1:549146/1‑139 (MQ=255)

                            aCATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCaa                                                                                                     >  1:246308/1‑139 (MQ=255)

                             cATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  1:606351/139‑1 (MQ=255)

                             cATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  2:267873/139‑1 (MQ=255)

                             cATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  2:549146/139‑1 (MQ=255)

                             cATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  1:1628317/139‑1 (MQ=255)

                               tCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCg                                                                                                  <  2:1731637/139‑1 (MQ=255)

                                  ccACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  1:748055/134‑1 (MQ=255)

                                  ccACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    >  2:748055/1‑134 (MQ=255)

                                        cATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    >  2:1457003/1‑128 (MQ=255)

                                        cATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  1:1457003/128‑1 (MQ=255)

                                        cATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAAt                                                                                         >  2:1729147/1‑139 (MQ=255)

                                           gAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGgc                                                                                      <  2:1009414/139‑1 (MQ=255)

                                                  aTGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  2:12963/118‑1 (MQ=255)

                                                  aTGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    >  1:12963/1‑118 (MQ=255)

                                                     cTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAaacaa                                                                            <  2:659669/139‑1 (MQ=255)

                                                          gTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGc                                                                       <  2:1768317/139‑1 (MQ=255)

                                                             cccGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAg                                                                    >  1:1558211/1‑139 (MQ=255)

                                                                 cTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCg                                                                >  2:1679125/1‑139 (MQ=255)

                                                                  tGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    >  1:396372/1‑102 (MQ=255)

                                                                  tGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  2:396372/102‑1 (MQ=255)

                                                                     aGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATc                                                                                                                                >  2:712141/1‑71 (MQ=255)

                                                                     aGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATc                                                                                                                                <  1:712141/71‑1 (MQ=255)

                                                                     aGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTgc                                                            <  2:246308/139‑1 (MQ=255)

                                                                            tCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGTGCGAAAACAACTGGCAAGATCGGTGCCGCCACg                                                     >  2:1771002/1‑139 (MQ=255)

                                                                                  tACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAActg                                               >  2:762413/1‑139 (MQ=255)

                                                                                        tCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCt                                         >  2:1526855/1‑139 (MQ=255)

                                                                                        tCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCt                                         >  2:839620/1‑139 (MQ=255)

                                                                                        tCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCt                                         >  2:12952/1‑139 (MQ=255)

                                                                                          aCGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGc                                                                                                       <  2:1155784/75‑1 (MQ=255)

                                                                                          aCGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGc                                                                                                       >  1:1155784/1‑75 (MQ=255)

                                                                                          aCGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTa                                       >  2:551187/1‑139 (MQ=255)

                                                                                            gtcgtcAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCa                                                                                                                            <  2:209839/52‑1 (MQ=255)

                                                                                            gtcgtcAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCa                                                                                                                            >  1:209839/1‑52 (MQ=255)

                                                                                               gtcAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTaaaaaa                                  >  2:1524536/1‑139 (MQ=255)

                                                                                                      aaCCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTg                           >  2:200001/1‑139 (MQ=255)

                                                                                                       aCCGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGc                          <  1:839620/139‑1 (MQ=255)

                                                                                                        ccGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCg                                                                                                  >  2:1121478/1‑66 (MQ=255)

                                                                                                        ccGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCg                                                                                                  <  1:1121478/66‑1 (MQ=255)

                                                                                                        ccGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCt                         >  1:1595587/1‑139 (MQ=255)

                                                                                                         cGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCAtt                                                                                                                  >  2:1704523/1‑49 (MQ=255)

                                                                                                         cGCTGAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCAtt                                                                                                                  <  1:1704523/49‑1 (MQ=255)

                                                                                                             gAGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTc                    <  1:468052/139‑1 (MQ=255)

                                                                                                              aGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGc                                                                                                       <  1:1427319/55‑1 (MQ=255)

                                                                                                              aGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGc                                                                                                       >  2:1427319/1‑55 (MQ=255)

                                                                                                              aGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTgc                                                            >  2:1604498/1‑98 (MQ=255)

                                                                                                              aGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTgc                                                            <  1:1604498/98‑1 (MQ=255)

                                                                                                              aGCGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCCGGCTTAAAAACCGGATTGCTTGTTCg                   >  1:1202805/1‑139 (MQ=255)

                                                                                                              aGCGATAAAATCAGAAATCACCACTGCATCGGAATCAAACCATTCCCTGCTTTGCAAGCGtt                                                                                                <  2:1193405/62‑1 (MQ=255)

                                                                                                              aGCGATAAAAGCACAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGtt                                                                                                >  1:1193405/1‑62 (MQ=255)

                                                                                                                cGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGAt                 <  2:1393323/139‑1 (MQ=255)

                                                                                                                cGATAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGAt                 <  2:711765/139‑1 (MQ=255)

                                                                                                                  aTAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAaacaa                                                                            <  2:141525/78‑1 (MQ=255)

                                                                                                                  aTAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAaacaa                                                                            >  1:141525/1‑78 (MQ=255)

                                                                                                                  aTAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGc                          >  2:179899/1‑128 (MQ=255)

                                                                                                                  aTAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGc                          <  1:179899/128‑1 (MQ=255)

                                                                                                                  aTAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGATGc               >  2:907820/1‑139 (MQ=255)

                                                                                                                   tAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  2:533583/53‑1 (MQ=255)

                                                                                                                   tAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    <  2:1077957/53‑1 (MQ=255)

                                                                                                                   tAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    >  1:533583/1‑53 (MQ=255)

                                                                                                                   tAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAg                                                                                                    >  1:1077957/1‑53 (MQ=255)

                                                                                                                   tAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGa                  >  2:144994/1‑135 (MQ=255)

                                                                                                                   tAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGa                  <  1:144994/135‑1 (MQ=255)

                                                                                                                   tAAAATCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGATGcc              >  2:803810/1‑139 (MQ=255)

                                                                                                                        tCAGAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGATGCCTtgtg         <  2:1558211/139‑1 (MQ=255)

                                                                                                                           gAAATCACCACTGCATCGGCATCAAACGATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGGTGCCTTGTGGGc      >  1:1066204/1‑139 (MQ=255)

                                                                                                                           gAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGc                                          <  1:71706/103‑1 (MQ=255)

                                                                                                                           gAAATCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGc                                          >  2:71706/1‑103 (MQ=255)

                                                                                                                             aaTCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCg                                                                                                  >  2:1494269/1‑45 (MQ=255)

                                                                                                                             aaTCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCg                                                                                                  <  1:1494269/45‑1 (MQ=255)

                                                                                                                               tCACCACTGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGATGCCTTGTGGGCCTGa  <  2:1595587/139‑1 (MQ=255)

CGCATGATGCCGGGTTTGCCGTGTGCCGACATCGCCACGGCATGAAAGCGATGCTGATGTACCCGCTGCAGCTCTTTCACTTTACTCGTCACGTCGTCAGGCAACCGCTGAGCGATAAAATCAGAAATCACCACCGCATCGGCATCAAACCATTCCCTGCTTTGCAAGCGTTCCATAATGGCGCGAAAACAACTGGCAAGATCGGTGCCGCCACGAAACTGCTGGCTTAAAAAACGGATTGCTTGTTCGATGCCTTGTGGGCCTGA  >  NC_000913/3928222‑3928487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A