Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F1 I1 R1 83 73.5 3575638 92.3% 3300313 107.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,574,101 T→C pseudogene (183/2937 nt) yjiV → pseudogene, conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,574,1010TC100.0% 344.4 / NA 91pseudogene (183/2937 nt)yjiVpseudogene, conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/51);  total (40/51)

ATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCAC  >  NC_000913/4573970‑4574228
                                                                                                                                   |                                                                                                                               
aTCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGc                                                                                                                          <  2:1491638/139‑1 (MQ=255)
    aTGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGa                                                                                                                      >  1:1653452/1‑139 (MQ=255)
     tGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGAc                                                                                                                     <  2:1299025/139‑1 (MQ=255)
      gTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACa                                                                                                                    <  2:176696/139‑1 (MQ=255)
         tGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAg                                                                                                                 >  1:253873/1‑139 (MQ=255)
           ttCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGc                                                                                                               >  2:310522/1‑139 (MQ=255)
                  aCTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCt                                                                                                        >  1:1676897/1‑139 (MQ=255)
                  aCTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCt                                                                                                        <  1:1532954/139‑1 (MQ=255)
                       aCCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGc                                                                                                   <  2:288870/139‑1 (MQ=255)
                        ccTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCt                                                                                                  <  2:1709789/139‑1 (MQ=255)
                        ccTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCt                                                                                                  <  2:1172695/139‑1 (MQ=255)
                          tAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCtat                                                                                                >  1:1520761/1‑139 (MQ=255)
                           aaTGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCtatg                                                                                               <  2:1653452/139‑1 (MQ=255)
                                         cGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAg                                                                                 >  2:1458392/1‑139 (MQ=255)
                                         cGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAg                                                                                 <  2:826081/139‑1 (MQ=255)
                                              ttCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACa                                                                            >  2:947060/1‑139 (MQ=255)
                                               tCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACaa                                                                           >  2:1648405/1‑139 (MQ=255)
                                                         aGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACt                                                                 >  2:64678/1‑139 (MQ=255)
                                                          gggCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGcaca                                                                                                                              <  1:1351569/77‑1 (MQ=255)
                                                          gggCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGcaca                                                                                                                              >  2:1351569/1‑77 (MQ=255)
                                                          gggCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATtgtg                                                                    <  2:737285/135‑1 (MQ=255)
                                                          gggCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATtgtg                                                                    >  1:737285/1‑135 (MQ=255)
                                                          gggCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACtg                                                                >  2:1035568/1‑139 (MQ=255)
                                                           ggCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGc                                                                                                   <  1:917215/103‑1 (MQ=255)
                                                           ggCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGc                                                                                                   >  2:917215/1‑103 (MQ=255)
                                                           ggCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACtgt                                                               >  2:597464/1‑139 (MQ=255)
                                                               cATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGaa                                                           >  2:863438/1‑139 (MQ=255)
                                                                 tatCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGc                                                         <  2:1078829/139‑1 (MQ=255)
                                                                 tatCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGc                                                         <  1:1595023/139‑1 (MQ=255)
                                                                  atCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc                                                        <  2:1416176/139‑1 (MQ=255)
                                                                  atCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc                                                        <  1:947060/139‑1 (MQ=255)
                                                                  atCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc                                                        <  1:863438/139‑1 (MQ=255)
                                                                  atCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc                                                        <  2:253873/139‑1 (MQ=255)
                                                                  atCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc                                                        <  1:1120903/139‑1 (MQ=255)
                                                                  atCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc                                                        <  1:1648405/139‑1 (MQ=255)
                                                                   tCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGccc                                                       <  2:887611/139‑1 (MQ=255)
                                                                     ttCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTg                                                     >  1:1133881/1‑139 (MQ=255)
                                                                         aGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGtata                                                 <  1:1501754/139‑1 (MQ=255)
                                                                             tAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGcaca                                                                                                                              <  1:322641/58‑1 (MQ=255)
                                                                             tAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGcaca                                                                                                                              >  2:322641/1‑58 (MQ=255)
                                                                             tAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGaa                                             >  1:1534687/1‑139 (MQ=255)
                                                                              aaTACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCtt                                                                                                       >  2:1020699/1‑80 (MQ=255)
                                                                              aaTACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCtt                                                                                                       <  1:1020699/80‑1 (MQ=255)
                                                                              aaTACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAg                                            >  2:1666711/1‑139 (MQ=255)
                                                                              aaTACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAg                                            <  1:310522/139‑1 (MQ=255)
                                                                               aTACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTgg                                                                                                    >  1:604239/1‑82 (MQ=255)
                                                                               aTACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTgg                                                                                                    <  2:604239/82‑1 (MQ=255)
                                                                               aTACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGt                                           >  2:24705/1‑139 (MQ=255)
                                                                                   cTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa                                       <  2:1603737/139‑1 (MQ=255)
                                                                                   cTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa                                       <  2:1081454/139‑1 (MQ=255)
                                                                                   cTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa                                       <  2:1534687/139‑1 (MQ=255)
                                                                                   cTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa                                       <  2:938163/139‑1 (MQ=255)
                                                                                     aGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGc                                                                                                                          <  1:1391907/54‑1 (MQ=255)
                                                                                     aGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGc                                                                                                                          >  2:1391907/1‑54 (MQ=255)
                                                                                     aGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAAtt                                                                       >  1:102425/1‑105 (MQ=255)
                                                                                     aGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAAtt                                                                       <  2:102425/105‑1 (MQ=255)
                                                                                         aatttGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTgg                                                             <  2:1127979/107‑1 (MQ=255)
                                                                                         aaTTTGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTgg                                                             >  1:1127979/1‑111 (MQ=255)
                                                                                         aaTATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGt                                 <  2:1133881/139‑1 (MQ=255)
                                                                                            atGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACa                                                                                                                    <  2:576289/53‑1 (MQ=255)
                                                                                            atGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACa                                                                                                                    >  1:576289/1‑53 (MQ=255)
                                                                                            atGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCt                                                                                                  >  2:827920/1‑71 (MQ=255)
                                                                                            atGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCt                                                                                                  <  1:827920/71‑1 (MQ=255)
                                                                                            atGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAAt                              >  2:585165/1‑139 (MQ=255)
                                                                                             tGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc                                                        >  1:102469/1‑112 (MQ=255)
                                                                                             tGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGcc                                                        <  2:102469/112‑1 (MQ=255)
                                                                                              gggCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGa                            <  2:710738/139‑1 (MQ=255)
                                                                                                   tgtgTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAg                                                                                 <  2:335217/81‑1 (MQ=255)
                                                                                                   tgtgTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAg                                                                                 >  1:335217/1‑81 (MQ=255)
                                                                                                   tgtgTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACg                                               >  1:865512/1‑115 (MQ=255)
                                                                                                   tgtgTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACg                                               <  2:865512/115‑1 (MQ=255)
                                                                                                   tgtgTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGAt                           <  1:1554360/135‑1 (MQ=255)
                                                                                                   tgtgTTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGAt                           >  2:1554360/1‑135 (MQ=255)
                                                                                                    gtgtTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTaa                      <  2:1676897/139‑1 (MQ=255)
                                                                                                     tgtTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCt                                                                                                        <  2:1612429/56‑1 (MQ=255)
                                                                                                     tgtTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCt                                                                                                        >  1:1612429/1‑56 (MQ=255)
                                                                                                     tgtTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGccc                                                       >  1:1239698/1‑105 (MQ=255)
                                                                                                     tgtTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGccc                                                       <  2:1239698/105‑1 (MQ=255)
                                                                                                     tgtTGATAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAAt                     <  1:64678/139‑1 (MQ=255)
                                                                                                          aTAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAg                                            <  2:271656/111‑1 (MQ=255)
                                                                                                          aTAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAg                                            >  1:271656/1‑111 (MQ=255)
                                                                                                          aTAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCAtt                                     <  1:1264643/118‑1 (MQ=255)
                                                                                                          aTAAAGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCAtt                                     >  2:1264643/1‑118 (MQ=255)
                                                                                                            aaaGATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGAGTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTATAATGAGCCTc              <  1:1035568/139‑1 (MQ=255)
                                                                                                               gATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCtatg                                                                                               >  1:1273257/1‑55 (MQ=255)
                                                                                                               gATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCtatg                                                                                               <  2:1273257/55‑1 (MQ=255)
                                                                                                               gATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa                                       <  2:498686/111‑1 (MQ=255)
                                                                                                               gATTGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCa                                       >  1:498686/1‑111 (MQ=255)
                                                                                                                 ttGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCt                                                                                                        <  2:628803/44‑1 (MQ=255)
                                                                                                                 ttGCAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCt                                                                                                        >  1:628803/1‑44 (MQ=255)
                                                                                                                    cAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGtata                                                 <  1:277062/96‑1 (MQ=255)
                                                                                                                    cAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGtata                                                 >  2:277062/1‑96 (MQ=255)
                                                                                                                    cAGATTAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGAC‑AAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTgg     >  1:1133741/1‑139 (MQ=255)
                                                                                                                         tAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCAc  >  2:395539/1‑138 (MQ=255)
                                                                                                                         tAAAGCACGGCACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCAc  <  1:395539/138‑1 (MQ=255)
                                                                                                                                   |                                                                                                                               
ATCGATGTCTGTTCAGGGACTCAACCTAATGCAAAGGATCCCGCATTTCTTAAAGTCAGGGCGCATATCTTCCAGCGTAATACCTAGGGAATATGGGCTTGTGTTGATAAAGATTGCAGATTAAAGCACGGTACACCGCTCGACAAAGGCTGGCCCTTTGGCTATGTGTATGTGAACCAGCGACAAAATTGTGACTGTGGAAGCCCTGTATACGAAGTTGCATTCTGTAATGATTGTAATGAGCCTCATCTTCTGGCAC  >  NC_000913/4573970‑4574228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A