Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F1 I2 R1	67	27.9	1239648	95.3%	1181384	112.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	647,740	+G	coding (296/552 nt)	citX ←	apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	647,736	1	.	G	100.0%	40.9 / NA	12	P100P (CCG→CCC)	citX	apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (7/5); total (7/5)

GCAGCGGCGAGGCGGCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCC‑GGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGTTTTGCGGCTAAGGCACGCAAGGCT  >  NC_000913/647601‑647838

gCAGCGGCGAGGCGGCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCC‑ggg                                                                                                     >  1:289495/1‑139 (MQ=255)

      gcgAGGCGGCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCC‑gggggcggc                                                                                               <  2:455409/139‑6 (MQ=255)

                           gcggcgGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCgg                                                                           >  2:121557/1‑139 (MQ=255)

                                                               aTCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAAt                                       >  1:590931/1‑139 (MQ=255)

                                                                   atatCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGc                                                                      >  1:591037/1‑104 (MQ=255)

                                                                   atatCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGc                                                                      <  2:591037/104‑1 (MQ=255)

                                                                      tCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAg                                <  2:340909/139‑1 (MQ=255)

                                                                               cGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGtttt                       <  2:293007/139‑1 (MQ=255)

                                                                                 cccGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGTTTTGc                     >  2:50825/1‑139 (MQ=255)

                                                                                         gATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGttt                        <  2:405693/128‑1 (MQ=255)

                                                                                         gATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGACGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGttt                        >  1:405693/1‑128 (MQ=255)

                                                                                                aTGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGTTTTGCGGCTAAGGCACGCaa      <  1:50825/139‑1 (MQ=255)

                                                                                                   ttCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGTTTTGCGGCTAAGGCACGCAAGGc   >  2:320478/1‑139 (MQ=255)

                                                                                                    tCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCCGGGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGTTTTGCGGCTAAGGCACGCAAGGCt  >  1:200263/1‑139 (MQ=255)

GCAGCGGCGAGGCGGCAGTGAATAGTCGCGGCGGGAGAGAATTTCGCCTTCGGGCGTCAGGACATCGATATCCCATAACCGCCCGAGAGGATGACTATGTTCAAGCTCAATGGTGGCGAGCTTGAGGTCGCGAGCC‑GGGGCGGCAATGCTCAACATGCCCTCCGGCCCGCTGGCGGAAACCAGTGCAGCCTGCTCCTGAATTTGCCAGCCCTGTTTTGCGGCTAAGGCACGCAAGGCT  >  NC_000913/647601‑647838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A