Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F1 I1 R1
|
67 |
31.4 |
1402038 |
96.1% |
1347358 |
109.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,971,307 |
G→A |
L16L (CTG→CTA) |
wecC → |
UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,971,307 | 0 | G | A | 100.0%
| 144.1
/ NA
| 41 | L16L (CTG→CTA) | wecC | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (21/20); total (21/20) |
TATGGTGATGGTCAGGCATGCTCTCGCATTCTGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTGCCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATATCGTCGAACCTGATTTGGCGAGTG > NC_000913/3971198‑3971428
|
tATGGTGATGGTCAGGCATGCTCTCGCATTCTGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCa > 1:401356/1‑139 (MQ=255)
gTGATGGTCAGGCATGCTCTCGCATTCTGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCaaaaa < 1:634676/139‑1 (MQ=255)
cAGGCATGCTCTCGCATTTTGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAAt > 1:387649/1‑139 (MQ=255)
cAGGCATGCTCTCGCATTCTGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAAt < 2:382988/139‑1 (MQ=255)
ctctCGCATTCTGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTACCTCACGGCAAAAACAGGTAATTGGTGTCg > 2:374637/1‑139 (MQ=255)
tGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCaa < 2:294962/109‑1 (MQ=255)
tGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCaa > 1:294962/1‑109 (MQ=255)
tGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGACaa > 1:125191/1‑109 (MQ=255)
tGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGACaa < 2:125191/109‑1 (MQ=255)
aGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATg < 2:387649/139‑1 (MQ=255)
cGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATg < 2:557664/137‑1 (MQ=255)
cGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATg > 1:557664/1‑137 (MQ=255)
ttAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACGAACGGCAGCAGCGTTTGCCTCACGGCaaaaa > 2:424216/1‑104 (MQ=255)
ttAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCaaaaa < 1:424216/104‑1 (MQ=255)
aaaaaaTAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTACCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTg < 1:374637/139‑1 (MQ=255)
atCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATc > 2:588723/1‑139 (MQ=255)
atCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATc > 2:115623/1‑139 (MQ=255)
tCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCa > 2:198483/1‑139 (MQ=255)
tGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCg < 2:400981/135‑1 (MQ=255)
tGAGTTTTGCGACCATTGCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCg > 1:400981/1‑135 (MQ=255)
ttttGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCat < 1:115623/139‑1 (MQ=255)
tttGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACAt < 1:386585/105‑1 (MQ=255)
tttGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACAt > 2:386585/1‑105 (MQ=255)
tGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGa > 1:481408/1‑90 (MQ=255)
tGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGa < 2:481408/90‑1 (MQ=255)
cGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATAtcgt < 1:588723/139‑1 (MQ=255)
aCCATTTCTGTTATCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATAtcgtcg > 1:256899/1‑139 (MQ=255)
tCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGAt < 1:526844/95‑1 (MQ=255)
tCGGACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGAt > 2:526844/1‑95 (MQ=255)
ggACTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATATCGTCGAACCTGATTTGGCGa < 2:401356/139‑1 (MQ=255)
cTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGata < 1:407675/70‑1 (MQ=255)
cTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGata > 2:407675/1‑70 (MQ=255)
cTGGGTTATATCGGGCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATATCGTCGAACCTGATTTGGCGAgtg > 2:186568/1‑139 (MQ=255)
ggCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGgtg < 2:303402/51‑1 (MQ=255)
ggCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGgtg > 1:303402/1‑51 (MQ=255)
ggCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGa < 1:461508/55‑1 (MQ=255)
ggCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGa > 2:461508/1‑55 (MQ=255)
ggCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATATCGTCGAACCTGATTTGGc > 2:213117/1‑121 (MQ=255)
ggCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATATCGTCGAACCTGATTTGGc < 1:7553/121‑1 (MQ=255)
ggCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATATCGTCGAACCTGATTTGGc < 1:213117/121‑1 (MQ=255)
ggCTACCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATATCGTCGAACCTGATTTGGc > 2:7553/1‑121 (MQ=255)
|
TATGGTGATGGTCAGGCATGCTCTCGCATTCTGGAAGCGTTAAAAAATAATCGGATATCACTATGAGTTTTGCGACCATTTCTGTTATCGGACTGGGTTATATCGGGCTGCCAACGGCAGCAGCGTTTGCCTCACGGCAAAAACAGGTAATTGGTGTCGATATCAACCAACATGCGGTTGATACCATCAATCGTGGCGAAATCCATATCGTCGAACCTGATTTGGCGAGTG > NC_000913/3971198‑3971428
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
