Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
63 |
64.8 |
2934156 |
93.7% |
2749304 |
111.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,635,578 |
A→G |
K449K (AAA→AAG) |
xseA → |
exonuclease VII, large subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,635,578 | 0 | A | G | 98.8%
| 304.0
/ NA
| 81 | K449K (AAA→AAG) | xseA | exonuclease VII, large subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (41/39); minor base C (0/1); total (41/40) |
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTACTACTGCTACTGACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAAAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAGGCTTTTAACACCTGCAACGGTTGATGGCAG > NC_000913/2635454‑2635707
|
ttACTACTGCTACTGACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTaaaaa > 2:1104261/1‑139 (MQ=255)
tactacTGCTACTGACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTaa < 2:1151208/135‑1 (MQ=255)
tactacTGCTACTGACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTaa > 1:1151208/1‑135 (MQ=255)
actactGCTACTGACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAgg < 1:790311/139‑1 (MQ=255)
actactGCTACTGACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAgg > 1:376866/1‑139 (MQ=255)
ctactgctactgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGAAAAAAGGt > 2:535046/1‑139 (MQ=255)
gctactgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTaaaa > 1:512723/1‑130 (MQ=255)
gctactgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTaaaa < 2:512723/130‑1 (MQ=255)
gctactgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCAtt > 2:1017402/1‑139 (MQ=255)
actgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTaaagaaa > 1:424369/1‑117 (MQ=255)
actgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTaaagaaa < 2:424369/117‑1 (MQ=255)
actgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAg > 2:272904/1‑139 (MQ=255)
actgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAg > 2:283523/1‑139 (MQ=255)
tgACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGcc < 1:1150513/139‑1 (MQ=255)
ggCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCa > 2:638538/1‑139 (MQ=255)
ggCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCa > 1:1174797/1‑139 (MQ=255)
cAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACg > 1:1188841/1‑139 (MQ=255)
tGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAAc > 1:1275916/1‑139 (MQ=255)
aaaaaaGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAAcgc > 2:1462919/1‑139 (MQ=255)
aaaGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGtt > 1:264087/1‑139 (MQ=255)
aGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGTAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGtttt > 1:874862/1‑139 (MQ=255)
aGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGtttt > 1:980305/1‑139 (MQ=255)
aGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGtttt > 2:1199780/1‑139 (MQ=255)
gAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTc < 2:13507/139‑1 (MQ=255)
gAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTc < 2:73841/139‑1 (MQ=255)
aaGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCg > 2:143745/1‑139 (MQ=255)
aGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGtttttt < 2:7726/136‑1 (MQ=255)
aGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGtttttt > 1:7726/1‑136 (MQ=255)
aGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGa > 2:775008/1‑139 (MQ=255)
aaGTTATAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTAGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAACAAATAGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat < 2:1266502/139‑1 (MQ=255)
aaGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat < 1:272904/139‑1 (MQ=255)
aaGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat < 1:843744/139‑1 (MQ=255)
aaGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat < 1:1104261/139‑1 (MQ=255)
aaGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat < 1:775008/139‑1 (MQ=255)
aaGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat < 2:282031/139‑1 (MQ=255)
aaGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat < 1:1434962/139‑1 (MQ=255)
aGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATc < 1:1462919/139‑1 (MQ=255)
aaaGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGc < 1:638538/139‑1 (MQ=255)
aGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGACGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTATTCGATATCAAGCCa < 2:980305/139‑1 (MQ=255)
ggTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGcc > 1:110713/1‑139 (MQ=255)
gTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGccc > 2:1188239/1‑139 (MQ=255)
gTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGccc > 1:1137999/1‑139 (MQ=255)
tGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCg > 1:832026/1‑139 (MQ=255)
gAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGt < 2:874862/139‑1 (MQ=255)
aaaTGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTg < 2:376866/139‑1 (MQ=255)
tGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGtttttt > 1:961503/1‑115 (MQ=255)
tGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGtttttt < 2:961503/115‑1 (MQ=255)
gCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGa < 1:585971/139‑1 (MQ=255)
gCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGa < 1:283523/139‑1 (MQ=255)
tAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACa > 1:1346715/1‑139 (MQ=255)
aaCCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCCAGCCATGCCCGTGCTGAc < 2:813220/137‑1 (MQ=255)
aaCCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTg < 1:1206006/132‑1 (MQ=255)
aaCCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTg > 2:1206006/1‑132 (MQ=255)
aaCCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGAc > 1:813220/1‑137 (MQ=255)
aaCCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAg < 2:1137999/139‑1 (MQ=255)
cacaCGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAg < 1:1145946/139‑1 (MQ=255)
acacGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGc < 2:11782/118‑1 (MQ=255)
acacGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGc > 1:11782/1‑118 (MQ=255)
cacGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTa < 1:1199780/139‑1 (MQ=255)
acGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTaa > 1:363184/1‑139 (MQ=255)
gTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATc > 2:933599/1‑139 (MQ=255)
tGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCt < 1:944523/123‑1 (MQ=255)
tGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGACAGCACGAATTCAACGCTTTTTTTCGATATCAAGCCATGCCCGTGCt > 2:944523/1‑123 (MQ=255)
cGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAgg > 2:1250734/1‑59 (MQ=255)
cGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAgg < 1:1250734/59‑1 (MQ=255)
cGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATc < 2:93056/100‑1 (MQ=255)
cGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATc > 1:93056/1‑100 (MQ=255)
ggCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGcaccac < 2:676663/139‑1 (MQ=255)
cTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAg < 1:252981/139‑1 (MQ=255)
tGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAgg < 1:325557/139‑1 (MQ=255)
gATAGAAAGTGAAGTAAAAAACATCCAGCCAGTaaagaaa > 1:863336/1‑40 (MQ=255)
gATAGAAAGTGAAGTAAAAAACATCCAGCCAGTaaagaaa < 2:863336/40‑1 (MQ=255)
aaaGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACt > 2:1116883/1‑122 (MQ=255)
aaaGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACt < 1:1116883/122‑1 (MQ=255)
aGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat < 1:1428926/86‑1 (MQ=255)
aGTGAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGatat > 2:1428926/1‑86 (MQ=255)
gAAGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAGGCTTTTAACACCt > 1:715521/1‑139 (MQ=255)
aaGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGAc > 2:455575/1‑102 (MQ=255)
aaGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGAc < 1:455575/102‑1 (MQ=255)
aGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTg < 1:120463/96‑1 (MQ=255)
aGTAAAAAACATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTg > 2:120463/1‑96 (MQ=255)
aaCATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAGGCTTTTAACACCTGCAACGGtt < 1:1310201/139‑1 (MQ=255)
cATCCAGCCAGTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAGGCTTTTAACACCTGCAACGGTTGa > 1:908041/1‑139 (MQ=255)
ccagccagTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAGGCTTTTAACACCTGCAACGGTTGATgg > 2:917373/1‑139 (MQ=255)
gccagTAAAGAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAGGCTTTTAACACCTGCAACGGTTGATGGCAg < 2:363184/139‑1 (MQ=255)
|
TTACTACTGCTACTGACGGCAATGTACTGAAAAAAGTGAAGCAAGTTAAAGCGGGTGAAATGCTAACCACACGTCTGGAAGACGGCTGGATAGAAAGTGAAGTAAAAAACATCCAGCCAGTAAAAAAATCGCGTAAAAAGGTGCATTAAGCCAGCACGAATTCAACGCGTTTTTTCGATATCAAGCCATGCCCGTGCTGACAGAAGTAATCTACTGCACCACAGGCTTTTAACACCTGCAACGGTTGATGGCAG > NC_000913/2635454‑2635707
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
