Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
63 |
64.8 |
2934156 |
93.7% |
2749304 |
111.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,668,544 |
(C)6→7 |
coding (645/1398 nt) |
yhjA ← |
putative cytochrome C peroxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,668,538 | 1 | . | C | 100.0%
| 245.3
/ NA
| 65 | G217G (GGC→GGG) | yhjA | putative cytochrome C peroxidase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (34/31); total (34/31) |
ATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACG‑CCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTGCA > NC_000913/3668412‑3668671
|
aTCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCAtt > 2:651628/1‑139 (MQ=255)
aTCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCAtt < 1:651628/139‑1 (MQ=255)
cAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAGTCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGc < 2:1200819/139‑1 (MQ=255)
ttGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGc > 2:1297572/1‑139 (MQ=255)
aCGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAgc < 2:590164/139‑1 (MQ=255)
cccAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaaa < 2:147797/139‑1 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCa > 1:305250/1‑105 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCa < 2:305250/105‑1 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGc > 1:1266827/1‑109 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGc < 2:1266827/109‑1 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAAt < 1:1095916/117‑1 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAAt > 2:1095916/1‑117 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa < 2:290888/128‑1 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa > 2:445302/1‑128 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa > 1:290888/1‑128 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaa < 1:445302/128‑1 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATc > 1:1448440/1‑139 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATc > 1:89905/1‑139 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATc > 1:578590/1‑139 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACG‑ccccccc > 2:1108096/1‑97 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACG‑ccccccc > 2:1294540/1‑97 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACG‑ccccccc < 1:1108096/98‑2 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACG‑ccccccc < 1:1294540/98‑2 (MQ=255)
cTCAACGTTAAATACTGAGTTAAATACCGTCGCCGCGTTATTCGGCCCAACTGCGCCACCAACACCAATCGAGGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATc > 1:1464759/1‑139 (MQ=255)
aaTACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATaaa < 1:1458446/139‑1 (MQ=255)
cTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg < 2:578590/139‑1 (MQ=255)
cTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg < 1:211263/139‑1 (MQ=255)
cTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg < 1:1297572/139‑1 (MQ=255)
cTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg < 2:29654/139‑1 (MQ=255)
tGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCg > 1:319642/1‑129 (MQ=255)
tGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCg < 2:319642/129‑1 (MQ=255)
gAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGa > 1:874359/1‑139 (MQ=255)
aGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATg < 1:517559/109‑1 (MQ=255)
aGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATg > 2:517559/1‑109 (MQ=255)
gTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATc > 2:289031/1‑139 (MQ=255)
tACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg > 1:725034/1‑129 (MQ=255)
tACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg < 2:725034/129‑1 (MQ=255)
tACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATa < 2:1381790/139‑1 (MQ=255)
cGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAg > 1:84627/1‑93 (MQ=255)
cGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAg < 2:84627/93‑1 (MQ=255)
tCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCa > 2:559715/1‑111 (MQ=255)
tCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCa < 1:559715/111‑1 (MQ=255)
tCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg > 2:1255132/1‑124 (MQ=255)
tCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg < 1:1255132/124‑1 (MQ=255)
tCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAgcg > 1:571052/1‑139 (MQ=255)
ggCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGTCGATAAACGGGGATCGTGATACAGCGCa > 1:880195/1‑139 (MQ=255)
gcgcGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTAt < 2:1117383/106‑1 (MQ=255)
gcgcGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTAt > 1:1117383/1‑106 (MQ=255)
cTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg > 2:911156/1‑103 (MQ=255)
cTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg < 1:911156/103‑1 (MQ=255)
ccaacaccaaTCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCg < 2:1464759/139‑1 (MQ=255)
ccaacaccaaTCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCg < 2:1448440/139‑1 (MQ=255)
accaaTCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg < 2:1377017/90‑1 (MQ=255)
accaaTCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACggg > 1:1377017/1‑90 (MQ=255)
tCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGtt > 2:469120/1‑139 (MQ=255)
tCGATGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGtt > 1:647914/1‑139 (MQ=255)
tGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTg < 2:509106/139‑1 (MQ=255)
tGTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTg > 1:509106/1‑139 (MQ=255)
gTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaaa > 2:204298/1‑56 (MQ=255)
gTTTTTCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGaaa < 1:204298/56‑1 (MQ=255)
ttCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGa < 2:89905/139‑1 (MQ=255)
tCTGCCATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGAt > 2:945814/1‑139 (MQ=255)
ccATCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGc > 1:791462/1‑139 (MQ=255)
aTCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTg > 1:386452/1‑139 (MQ=255)
aTCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTg > 1:598951/1‑139 (MQ=255)
aTCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTg > 1:1247467/1‑139 (MQ=255)
tCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACg > 1:1377686/1‑66 (MQ=255)
tCGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACg < 2:1377686/66‑1 (MQ=255)
cGACGCCCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTGCa < 2:874359/139‑1 (MQ=255)
|
ATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCGTCGGCGCGTTAATCGGCCCAACTGCGCCACCAACACCAATCGATGTTTTTCTGCCATCGACG‑CCCCCCGCATTCAACGCATGGCAATGAGCGCATGAAATGGTGCTATCAGCCGATAAACGGGGATCGTGATACAGCGCAAAACCCAACGCCACTTTTTGCGCATCGGTAGGCAGTTTTTGCGGGATGGGCTGCA > NC_000913/3668412‑3668671
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
