Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
63 |
64.8 |
2934156 |
93.7% |
2749304 |
111.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,280,409 |
(A)7→8 |
coding (430/1650 nt) |
yjcE → |
putative cation/proton antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,280,402 | 1 | . | A | 100.0%
| 183.8
/ NA
| 52 | P141P (CCG→CCA) | yjcE | putative cation/proton antiporter |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (24/28); total (24/28) |
ACCGTGGTCGGCATTGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCG‑AAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACGATGATCTTCACCGTCGGCGGTGCGACGGT > NC_000913/4280265‑4280527
|
aCCGTGGTCGGCATTGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCG‑a > 1:1020616/1‑139 (MQ=255)
ccGTGGTCGGCATTGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCG‑aa < 2:1194524/139‑1 (MQ=255)
ccGTGGTCGGCATTGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCG‑aa > 1:161195/1‑139 (MQ=255)
tGGTCGGCATTGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCG‑aaaaa > 2:1280150/1‑139 (MQ=255)
tGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATggg > 1:1029568/1‑139 (MQ=255)
tGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATggg > 1:1199058/1‑139 (MQ=255)
tGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATggg > 1:373811/1‑139 (MQ=255)
aCTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCg < 2:120322/139‑1 (MQ=255)
tGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGaa < 2:976779/139‑1 (MQ=255)
tGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGaa > 2:510037/1‑139 (MQ=255)
tGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGaa < 2:1029568/139‑1 (MQ=255)
tGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGaa < 2:1020616/139‑1 (MQ=255)
gggTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAg > 1:739262/1‑139 (MQ=255)
gggTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAg > 1:193169/1‑139 (MQ=255)
ggtggtGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCg < 2:166071/135‑1 (MQ=255)
ggtggtGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGc > 1:1006544/1‑139 (MQ=255)
ggtggtGCCGGGCATTCCGCTGATCCCTGCCTTTACGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCg > 1:166071/1‑135 (MQ=255)
gtgCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTtg < 2:1006544/139‑1 (MQ=255)
tgCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTtga > 2:417332/1‑139 (MQ=255)
tgCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTG‑TTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTtgat > 1:1317646/1‑139 (MQ=255)
ggCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGatgaat < 1:510037/139‑1 (MQ=255)
ggCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGatgaat > 2:1452165/1‑139 (MQ=255)
cATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGatgaatga < 1:657845/139‑1 (MQ=255)
cATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGatgaatga < 1:670957/139‑1 (MQ=255)
tCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGc < 1:417332/139‑1 (MQ=255)
gCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTTCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTc < 2:1395321/139‑1 (MQ=255)
tGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCG‑aaaaaaaatcat < 1:861231/98‑6 (MQ=255)
tGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCG‑aaaaaaaatcat > 2:861231/1‑93 (MQ=255)
cTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTgg < 2:193169/139‑1 (MQ=255)
cTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTgg < 1:1452165/139‑1 (MQ=255)
tGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGgt > 1:104656/1‑139 (MQ=255)
gCCTTTGCGCTGGCGGCGGTG‑TTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGgtgt < 2:1317646/139‑1 (MQ=255)
gcgcTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTg > 1:562472/1‑139 (MQ=255)
cggTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCg < 2:161195/139‑1 (MQ=255)
gaccgaTGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGAt < 2:373811/139‑1 (MQ=255)
gaccgaTGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGAt < 2:12809/139‑1 (MQ=255)
aTGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCa > 1:1204587/1‑61 (MQ=255)
aTGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCa < 2:1204587/61‑1 (MQ=255)
aTGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTc > 1:1220125/1‑100 (MQ=255)
aTGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTc < 2:1220125/100‑1 (MQ=255)
gCTGTGGCGCTCTCCGGGATTGTTGGCGAGGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGa < 1:1191498/131‑1 (MQ=255)
gCTGTGGCGCTCTCCGGGATTGTTGGCGAGGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGa > 2:1191498/1‑131 (MQ=255)
tgGCGCTCTGCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACgatga > 1:984086/1‑139 (MQ=255)
ctctCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCt < 1:119470/83‑1 (MQ=255)
ctctCCGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCt > 2:119470/1‑83 (MQ=255)
cGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACGATGATCTTCACCGt > 2:1088821/1‑139 (MQ=255)
cGGGATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACGATGATCTTCACCGt < 2:104656/139‑1 (MQ=255)
gATTGTTGGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACGATGATCTTCACCGTcgg < 1:1280150/139‑1 (MQ=255)
ttgGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTtgatg < 1:1457462/60‑1 (MQ=255)
ttgGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTtgatg > 2:1457462/1‑60 (MQ=255)
ttgGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGAt > 2:125882/1‑110 (MQ=255)
ttgGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGAt < 1:125882/110‑1 (MQ=255)
ttgGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACgatgat > 2:1357515/1‑122 (MQ=255)
ttgGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACgatgat < 1:1357515/122‑1 (MQ=255)
ttgGCGAAGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACGATGATCTTCACCGTCGGCGGTg > 2:1075923/1‑139 (MQ=255)
aGGGCGCATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACGATGATCTTCACCGTCGGCGGTGCGACGGt < 1:886617/139‑1 (MQ=255)
gcgcATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCt > 1:886424/1‑60 (MQ=255)
gcgcATCCCGAAAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCt < 2:886424/60‑1 (MQ=255)
|
ACCGTGGTCGGCATTGGCTTCCTTATTTACTGGGTGGTGCCGGGCATTCCGCTGATCCCTGCCTTTGCGCTGGCGGCGGTGCTTTCTCCGACCGATGCTGTGGCGCTCTCCGGGATTGTTGGCGAAGGGCGCATCCCG‑AAAAAAATCATGGGCATTTTGCAGGGCGAAGCGTTGATGAATGACGCCTCCGGTCTGGTGTCGTTGAAGTTTGCCGTAGCAGTGGCGATGGGGACGATGATCTTCACCGTCGGCGGTGCGACGGT > NC_000913/4280265‑4280527
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
