Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F1 I2 R1
|
70 |
59.9 |
2639336 |
94.5% |
2494172 |
113.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,772,200 |
G→A |
pseudogene (867/900 nt) |
yfjV ← |
pseudogene, CP4‑57 prophage,Phage or Prophage Related, putative pump protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,772,200 | 0 | G | A | 100.0%
| 153.9
/ NA
| 44 | pseudogene (867/900 nt) | yfjV | pseudogene, CP4‑57 prophage,Phage or Prophage Related, putative pump protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/20); total (24/20) |
TCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGT > NC_000913/2772067‑2772331
|
tCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGc > 1:1285926/1‑136 (MQ=255)
ggTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCagag < 1:1033101/139‑1 (MQ=255)
ttCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg < 2:867008/139‑1 (MQ=255)
ttCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg > 1:124249/1‑139 (MQ=255)
ttGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACaa > 1:947219/1‑139 (MQ=255)
tgttATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCAc < 2:233775/139‑1 (MQ=255)
gttATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCAcc > 1:635627/1‑139 (MQ=255)
aTGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 2:124249/139‑1 (MQ=255)
tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 2:222859/131‑1 (MQ=255)
tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc > 1:222859/1‑131 (MQ=255)
tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:261902/1‑139 (MQ=255)
tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:371193/1‑139 (MQ=255)
tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:655900/1‑139 (MQ=255)
gtgtTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGc < 1:508215/139‑1 (MQ=255)
tGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACgg > 2:208014/1‑139 (MQ=255)
gAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGa < 2:947219/139‑1 (MQ=255)
tGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg > 1:653720/1‑95 (MQ=255)
tGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg < 2:653720/95‑1 (MQ=255)
tGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTa < 2:261902/139‑1 (MQ=255)
ccACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAat < 1:208014/139‑1 (MQ=255)
cGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGGGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGAACAGGCATGACAATGCCGGTACGGAAGTAAGATCCCCaa > 1:79371/1‑139 (MQ=21)
cTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCaa > 2:710012/1‑139 (MQ=255)
cTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCaa > 1:756288/1‑139 (MQ=255)
cATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGc > 1:946461/1‑139 (MQ=255)
atCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTa > 1:931098/1‑91 (MQ=255)
atCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTa < 2:931098/91‑1 (MQ=255)
tCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTggg > 2:955115/1‑130 (MQ=255)
tCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTggg < 1:955115/130‑1 (MQ=255)
aTCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGc < 2:371193/139‑1 (MQ=255)
aaTTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTg < 2:88625/106‑1 (MQ=255)
aaTTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTg > 1:88625/1‑106 (MQ=255)
tACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg < 2:346563/42‑1 (MQ=255)
tACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg > 1:346563/1‑42 (MQ=255)
cAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAatat < 1:210540/88‑1 (MQ=255)
cAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAatat > 2:210540/1‑88 (MQ=255)
agagagCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGa < 1:1068376/139‑1 (MQ=255)
agagCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca > 1:349905/1‑45 (MQ=255)
agagCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca < 2:349905/45‑1 (MQ=255)
agCCGCCACGCCAGCGCAGCCAGAGTGACAATCAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTc < 1:769504/99‑1 (MQ=255)
agCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTc > 2:769504/1‑99 (MQ=255)
ccgccACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCa > 2:355061/1‑139 (MQ=255)
gccacgccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAAt < 2:635627/139‑1 (MQ=255)
cacgccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCg > 1:1006970/1‑139 (MQ=255)
ccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGt > 2:537563/1‑139 (MQ=255)
|
TCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGT > NC_000913/2772067‑2772331
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
