Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F1 I2 R1 94 59.5 3027142 91.9% 2781943 108.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,386,276 A→G V638A (GTA→GCA)  aaeB ← p‑hydroxybenzoic acid efflux system component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,386,2760AG100.0% 270.7 / NA 73V638A (GTA→GCA) aaeBp‑hydroxybenzoic acid efflux system component
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (33/40);  total (33/40)

CGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTACCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCTGTG  >  NC_000913/3386140‑3386410
                                                                                                                                        |                                                                                                                                      
cGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGcc                                                                                                                                      >  2:1338288/1‑139 (MQ=255)
 gTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCg                                                                                                                                     <  1:1338288/139‑1 (MQ=255)
 gTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCg                                                                                                                                     <  2:3950/139‑1 (MQ=255)
   cACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGt                                                                                                                                   >  1:514122/1‑139 (MQ=255)
      gTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTcc                                                                                                                                <  1:254538/139‑1 (MQ=255)
        ttCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGt                                                                                                                              <  2:389554/139‑1 (MQ=255)
                gAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCg                                                                                                                      <  2:554297/139‑1 (MQ=255)
                    tCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCCTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTgg                                                                                                                  <  1:806567/139‑1 (MQ=255)
                       gCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGgcgc                                                                                                               >  2:1470806/1‑139 (MQ=255)
                                          aGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCttt                                                                                            >  2:1263063/1‑139 (MQ=255)
                                            ccATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCAc                                                                                                                           <  2:424684/106‑1 (MQ=255)
                                            ccATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCAc                                                                                                                           >  1:424684/1‑106 (MQ=255)
                                            ccATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTc                                                                                          >  2:1263634/1‑139 (MQ=255)
                                               tGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCgg                                                                                                                     <  2:833329/109‑1 (MQ=255)
                                               tGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCgg                                                                                                                     >  1:833329/1‑109 (MQ=255)
                                               tGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTg                                                                                       >  2:249343/1‑139 (MQ=255)
                                                gAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGTCAGATGCGTAGCTTTTCCTgg                                                                                      >  2:1390939/1‑139 (MQ=255)
                                                gAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTgg                                                                                      <  1:249343/139‑1 (MQ=255)
                                                gAAAAAACCGACGCTTTTGGCCTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTgg                                                                                      <  1:40834/139‑1 (MQ=255)
                                                 aaaaaaCCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGtt                                                                                                                                  >  1:25789/1‑94 (MQ=255)
                                                 aaaaaaCCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGtt                                                                                                                                  <  2:25789/94‑1 (MQ=255)
                                                 aaaaaaCCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGt                                                                                     >  1:460945/1‑139 (MQ=255)
                                                         gACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTcc                                                                             >  1:1183087/1‑139 (MQ=255)
                                                           cGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATg                                                                                                     <  2:1223123/113‑1 (MQ=255)
                                                           cGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATg                                                                                                     >  1:1223123/1‑113 (MQ=255)
                                                               tttGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCTAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGatct                                                                       <  2:970299/139‑1 (MQ=255)
                                                                        ggTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAAc                                                              >  2:1048794/1‑139 (MQ=255)
                                                                         gTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACt                                                             <  2:514122/139‑1 (MQ=255)
                                                                                   aaCTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTa                                                   >  2:1307249/1‑139 (MQ=255)
                                                                                       aTCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACcga                                               <  1:564501/139‑1 (MQ=255)
                                                                                         cGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACcgacg                                             <  1:1470806/139‑1 (MQ=255)
                                                                                            tCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGacgacg                                          <  2:930629/139‑1 (MQ=255)
                                                                                                  cATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTatc                                    <  2:746909/139‑1 (MQ=255)
                                                                                                      ttGATACTTATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCg                                >  1:36673/1‑139 (MQ=255)
                                                                                                             ttATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACggg                         <  1:1263063/139‑1 (MQ=255)
                                                                                                             ttATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACggg                         <  2:301338/139‑1 (MQ=255)
                                                                                                              tATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGc                        <  2:991818/139‑1 (MQ=255)
                                                                                                              tATGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGc                        <  1:1307249/139‑1 (MQ=255)
                                                                                                                tGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCAc                                                                                                                           >  2:359255/1‑38 (MQ=255)
                                                                                                                tGGAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCAc                                                                                                                           <  1:359255/38‑1 (MQ=255)
                                                                                                                 ggAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCaa                                                               <  1:1503016/97‑1 (MQ=255)
                                                                                                                 ggAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCaa                                                               >  2:1503016/1‑97 (MQ=255)
                                                                                                                 ggAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCACTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGa                     <  1:899100/139‑1 (MQ=255)
                                                                                                                  gAGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGat                    <  2:36673/139‑1 (MQ=255)
                                                                                                                   aGCATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGata                   >  1:241036/1‑139 (MQ=255)
                                                                                                                     cATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGacgacg                                          >  2:1250824/1‑114 (MQ=255)
                                                                                                                     cATCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGacgacg                                          <  1:1250824/114‑1 (MQ=255)
                                                                                                                      aTCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGacgacg                                          <  1:174087/113‑1 (MQ=255)
                                                                                                                      aTCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGacgacg                                          >  2:174087/1‑113 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGt                                                                                                                    <  1:462337/38‑1 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGt                                                                                                                    >  2:462337/1‑38 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTa                             <  2:785464/125‑1 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACgg                          >  1:358891/1‑128 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACgg                          <  2:358891/128‑1 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGc                        <  2:1239006/130‑1 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGc                        >  1:1239006/1‑130 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGatat                  >  1:757442/1‑136 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGatat                  <  2:757442/136‑1 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATcac               >  1:932057/1‑139 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATcac               <  1:1263634/139‑1 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATcac               >  1:736253/1‑139 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATcac               >  1:193294/1‑139 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATcac               >  2:1376969/1‑139 (MQ=255)
                                                                                                                       tCCCCGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGCTTATCATCGCTa                             >  1:785464/1‑125 (MQ=255)
                                                                                                                         cccGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATcac               >  2:341723/1‑137 (MQ=255)
                                                                                                                         cccGCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATcac               <  1:341723/137‑1 (MQ=255)
                                                                                                                            gCCAGCCGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGt          <  2:764995/139‑1 (MQ=255)
                                                                                                                                 ccGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGc                                                                                                    <  1:655297/44‑1 (MQ=255)
                                                                                                                                 ccGATTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGc                                                                                                    >  2:655297/1‑44 (MQ=255)
                                                                                                                                    aTTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACcga                                               >  1:1460556/1‑94 (MQ=255)
                                                                                                                                    aTTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACcga                                               <  2:1460556/94‑1 (MQ=255)
                                                                                                                                    aTTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCtgtg  <  2:460945/139‑1 (MQ=255)
                                                                                                                                    aTTTGCCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCtgtg  <  1:1048794/139‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CGTCACGTTTCGCGGCGAGTTCTGCCGTGCATCGCTAAGTATAGCCATGAAAAAACCGACGCTTTTGGCGTCGGTTTTGACTTAACTATCGGTCAACGCATGTTGATACTTATGGAGCATCCCCGCCAGCCGATTTACCGGTTCCGTCACCTGCGGTGGCGCTTGCCAGATGCGTAGCTTTTCCTGGTAGATTTCCAGTTCTTCCAGCAACTGGCCAAAGTACCGACGACGTTTATCATCGCTACGGGCAGATATCACATGGTCTGCTGTG  >  NC_000913/3386140‑3386410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A