Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I2 R1	94	59.5	3027142	91.9%	2781943	108.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,541,927	T→C	R507R (CGT→CGC)	feoB →	ferrous iron transporter protein B and GTP‑binding protein, membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,541,927	0	T	C	100.0%	296.9 / NA	80	R507R (CGT→CGC)	feoB	ferrous iron transporter protein B and GTP‑binding protein, membrane protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/40); total (40/40)

GTATTGTGATGGCGGTGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGTCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGGCGCTGGCGTCCGTCAGC  >  NC_000913/3541791‑3542059

gTATTGTGATGGCGGTGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCt                                                                                                                                    >  2:1335380/1‑139 (MQ=255)

gTATTGTGATGGCGGTGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCt                                                                                                                                    >  1:651201/1‑139 (MQ=255)

gTATTGTGATGGCGGTGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCt                                                                                                                                    >  2:84149/1‑139 (MQ=255)

gTATTGTGATGGCGGTGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCt                                                                                                                                    >  2:795431/1‑139 (MQ=255)

         tGGCGGTGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCACCTGAAAGGCtt                                                                                                                           >  1:678414/1‑139 (MQ=255)

              gTGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTc                                                                                                                      >  2:324842/1‑139 (MQ=255)

               tGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCACCTGAAAGGCTTCGTTCt                                                                                                                     <  2:678414/139‑1 (MQ=255)

                  tGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCg                                                                                                                  <  2:1195687/139‑1 (MQ=255)

                  tGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCg                                                                                                                  <  2:1273634/139‑1 (MQ=255)

                  tGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCg                                                                                                                  <  1:700510/139‑1 (MQ=255)

                  tGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCg                                                                                                                  <  2:719373/139‑1 (MQ=255)

                  tGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGACTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCg                                                                                                                  <  1:1125779/139‑1 (MQ=255)

                    aCTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTg                                                                                                                <  1:415831/139‑1 (MQ=255)

                     cTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGc                                                                                                               <  1:84149/139‑1 (MQ=255)

                              tGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGt                                                                                                      <  2:635809/139‑1 (MQ=255)

                                  cAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGatc                                                                                                  >  1:1112422/1‑139 (MQ=255)

                                           catcatGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTc                                                                                         >  2:807278/1‑139 (MQ=255)

                                              catGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGc                                                                                      >  2:1122672/1‑139 (MQ=255)

                                              catGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGc                                                                                      >  2:958449/1‑139 (MQ=255)

                                               atGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCa                                                                                     >  2:228812/1‑139 (MQ=255)

                                                tGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCAt                                                                                    >  1:1443193/1‑139 (MQ=255)

                                                tGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCAt                                                                                    >  1:1284746/1‑139 (MQ=255)

                                                     ggTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGaa                                                                                                                                 <  2:892468/89‑1 (MQ=255)

                                                     ggTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGaa                                                                                                                                 >  1:892468/1‑89 (MQ=255)

                                                       tGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTg                                                                             >  1:965486/1‑139 (MQ=255)

                                                        gAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGa                                                                            <  2:965486/139‑1 (MQ=255)

                                                        gAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGa                                                                            <  1:1335380/139‑1 (MQ=255)

                                                          aGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAgc                                                                          <  1:466335/139‑1 (MQ=255)

                                                               cGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCttt                                                                     >  2:1260844/1‑139 (MQ=255)

                                                                          aTGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTtct                                                          >  2:453434/1‑139 (MQ=255)

                                                                            ggAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCg                                                        >  2:1158102/1‑139 (MQ=255)

                                                                            ggAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCg                                                        <  1:1316663/139‑1 (MQ=255)

                                                                            ggAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCg                                                        <  1:795431/139‑1 (MQ=255)

                                                                              aGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCt                                                      <  2:1443193/139‑1 (MQ=255)

                                                                                 tGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAg                                                   <  1:324842/139‑1 (MQ=255)

                                                                                   ccGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTaaa                                                                                                        <  1:328840/84‑1 (MQ=255)

                                                                                   ccGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTaaa                                                                                                        >  2:328840/1‑84 (MQ=255)

                                                                                         tATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGaaaa                                           <  1:764385/139‑1 (MQ=255)

                                                                                         tATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGaaaa                                           <  2:651201/139‑1 (MQ=255)

                                                                                         tATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGaaaa                                           <  1:1382507/139‑1 (MQ=255)

                                                                                         tATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGaaaa                                           <  2:1112422/139‑1 (MQ=255)

                                                                                          aTCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAAt                                          >  1:156542/1‑139 (MQ=255)

                                                                                           tCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAAtc                                         <  2:1284746/139‑1 (MQ=255)

                                                                                           tCATGTACCACACGTTAAAAGACTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAAtc                                         <  2:336134/139‑1 (MQ=255)

                                                                                                  ccACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATa                                  <  1:1260844/139‑1 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGc                                                                                                               >  2:1296095/1‑59 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGc                                                                                                               <  1:1296095/59‑1 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGt                                                                                          <  2:995037/80‑1 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGt                                                                                          >  1:995037/1‑80 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAAtc                                         <  1:1429315/129‑1 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAAtc                                         >  2:1429315/1‑129 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGAt                                   >  1:215641/1‑135 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGAt                                   <  2:215641/135‑1 (MQ=255)

                                                                                                     cacGTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACa                               >  1:409420/1‑139 (MQ=255)

                                                                                                        gTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAACGGCTTCGTTCTGCGTGCTGGTAAAg                                                                                                       >  2:1316264/1‑64 (MQ=255)

                                                                                                        gTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAg                                                                                                       <  1:1316264/64‑1 (MQ=255)

                                                                                                        gTTAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCa                            >  1:543971/1‑139 (MQ=255)

                                                                                                         ttAAAAGCCTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCaa                           <  1:288340/139‑1 (MQ=255)

                                                                                                                ccTGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCg                    >  1:1120577/1‑139 (MQ=255)

                                                                                                                  tGATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGgc                  >  1:777569/1‑139 (MQ=255)

                                                                                                                   gATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGt                                                                                                      <  2:1510940/54‑1 (MQ=255)

                                                                                                                   gATTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGt                                                                                                      >  1:1510940/1‑54 (MQ=255)

                                                                                                                    aTTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGt                                                                                                      >  1:1107499/1‑53 (MQ=255)

                                                                                                                    aTTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGt                                                                                                      <  2:1107499/53‑1 (MQ=255)

                                                                                                                    aTTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCTTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGgcgc                >  1:181403/1‑139 (MQ=255)

                                                                                                                    aTTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGgcgc                >  1:216298/1‑139 (MQ=255)

                                                                                                                    aTTATCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGgcgc                <  1:228812/139‑1 (MQ=255)

                                                                                                                       aTCCAGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGGCGCTgg             <  2:409420/139‑1 (MQ=255)

                                                                                                                           aGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAgcg                                                                         >  2:555723/1‑75 (MQ=255)

                                                                                                                           aGACCTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAgcg                                                                         <  1:555723/75‑1 (MQ=255)

                                                                                                                              ccTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGa                                                                            <  1:1138343/69‑1 (MQ=255)

                                                                                                                              ccTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGa                                                                            >  2:1138343/1‑69 (MQ=255)

                                                                                                                              ccTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATa                                  >  2:695390/1‑111 (MQ=255)

                                                                                                                              ccTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATa                                  <  1:695390/111‑1 (MQ=255)

                                                                                                                              ccTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGGCGCTGGcgtccgt      <  2:1328672/139‑1 (MQ=255)

                                                                                                                               cTGGCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGGCGCTGGcgtccgtc     >  1:1307211/1‑139 (MQ=255)

                                                                                                                                  gCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTa                                                                                                          >  2:783091/1‑35 (MQ=255)

                                                                                                                                  gCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTa                                                                                                          <  1:783091/35‑1 (MQ=255)

                                                                                                                                  gCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGGCGCTGGCGTCCGTCAGc  >  2:12430/1‑139 (MQ=255)

                                                                                                                                  gCAGCGCCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGGCGCTGGCGTCCGTCAGc  >  2:1170852/1‑139 (MQ=255)

GTATTGTGATGGCGGTGCTGACTGGCCTGATGCTCAAGTACACCATCATGCGCGGTGAAGCGACGCCGTTTGTCATGGAGTTGCCGGTCTATCATGTACCACACGTTAAAAGCCTGATTATCCAGACCTGGCAGCGTCTGAAAGGCTTCGTTCTGCGTGCTGGTAAAGTGATCATCATCGTCAGCATTTTCCTGAGCGCTTTCAACAGCTTCTCGCTGAGCGGGAAAATCGTCGATAACATCAACGACTCGGCGCTGGCGTCCGTCAGC  >  NC_000913/3541791‑3542059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A