Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I2 R1
|
58 |
36.1 |
1832140 |
90.7% |
1661750 |
105.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,621,471 |
G→A |
A197T (GCC→ACC) |
deoD → |
purine nucleoside phosphorylase 1, nicotinamide 1‑beta‑D‑riboside phosphorylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,621,471 | 0 | G | A | 100.0%
| 119.8
/ NA
| 35 | A197T (GCC→ACC) | deoD | purine nucleoside phosphorylase 1, nicotinamide 1‑beta‑D‑riboside phosphorylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (16/19); total (16/19) |
ACCTGTTCTCCGCTGACCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAGCCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTCTGCTGGGCGATAAA > NC_000913/4621340‑4621596
|
aCCTGTTCTCCGCTGACCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGAc < 2:796377/139‑1 (MQ=255)
ctcCGCTGACCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATc > 2:351133/1‑136 (MQ=255)
ctcCGCTGACCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATc < 1:351133/136‑1 (MQ=255)
tcCGCTGACCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCa < 1:109704/139‑1 (MQ=255)
cGCTGACCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCAcc > 1:805732/1‑139 (MQ=255)
aCCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTAt < 2:269631/138‑1 (MQ=255)
aCCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTAt > 1:269631/1‑138 (MQ=255)
gACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTc < 2:805732/139‑1 (MQ=255)
ggCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACg > 2:837673/1‑139 (MQ=255)
tGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGAc < 2:58888/139‑1 (MQ=255)
tGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGa > 2:352431/1‑139 (MQ=255)
tACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGa < 1:352431/139‑1 (MQ=255)
cGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGa > 1:36281/1‑137 (MQ=255)
cGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGa < 2:36281/137‑1 (MQ=255)
cGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACt > 1:818911/1‑139 (MQ=255)
gCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCg < 1:217918/139‑1 (MQ=255)
gCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCTAAATCGCACTGGAAt < 1:610175/132‑1 (MQ=255)
gCGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAAt > 2:610175/1‑132 (MQ=255)
cGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCt < 2:51767/85‑1 (MQ=255)
cGTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCt > 1:51767/1‑85 (MQ=255)
cGTCGCTGCAGAATTTGGCGCGAAAACCCTGAACATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTctg > 2:786199/1‑139 (MQ=255)
gTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCa > 2:14499/1‑40 (MQ=255)
gTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCa < 1:14499/40‑1 (MQ=255)
gTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTAcc < 2:183769/99‑1 (MQ=255)
gTCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTAcc > 1:183769/1‑99 (MQ=255)
tCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCg < 2:352652/81‑1 (MQ=255)
tCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCg > 1:352652/1‑81 (MQ=255)
tCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTctg < 2:533205/137‑1 (MQ=255)
tCGCTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTctg > 1:533205/1‑137 (MQ=255)
cTGCAGAATTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTCTGCTggg < 2:818911/139‑1 (MQ=255)
aTTTGGCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTCTGCTGGGCGATaaa < 2:446312/139‑1 (MQ=255)
ggCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAg > 2:490851/1‑54 (MQ=255)
ggCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAg < 1:490851/54‑1 (MQ=255)
ggCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTCTGCTGGGCGATa > 1:912042/1‑133 (MQ=255)
ggCGCGAAAACCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTCTGCTGGGCGATa < 2:912042/133‑1 (MQ=255)
|
ACCTGTTCTCCGCTGACCTGTTCTACTCTCCGGACGGCGAAATGTTCGACGTGATGGAAAAATACGGCATTCTCGGCGTGGAAATGGAAGCGGCTGGTATCTACGGCGTCGCTGCAGAATTTGGCGCGAAAGCCCTGACCATCTGCACCGTATCTGACCACATCCGCACTCACGAGCAGACCACTGCCGCTGAGCGTCAGACTACCTTCAACGACATGATCAAAATCGCACTGGAATCCGTTCTGCTGGGCGATAAA > NC_000913/4621340‑4621596
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
