Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F1 I1 R1
|
64 |
69.7 |
3300380 |
93.4% |
3082554 |
111.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,428,954 |
G→A |
intergenic (‑192/‑282) |
rrsD ← / → yrdA |
16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,428,954 | 0 | G | A | 85.7%
| 177.1
/ 24.0
| 77 | intergenic (‑192/‑282) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| Reads supporting (aligned to +/- strand): ref base G (5/6); new base A (37/29); total (42/35) |
| Fisher's exact test for biased strand distribution p-value = 5.34e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
CCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCAC > NC_000913/3428857‑3429081
|
ccGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 1:1068344/1‑139 (MQ=11)
ccGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGACAACCCTGAATTTCAGGAtttttt > 1:306260/1‑139 (MQ=2)
gTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc > 1:346298/1‑139 (MQ=17)
gTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc > 2:1463679/1‑139 (MQ=17)
tATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct > 1:1605612/1‑139 (MQ=17)
aTCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtctc > 2:62197/1‑139 (MQ=18)
ttCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc > 1:991568/1‑139 (MQ=25)
tCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg > 1:1640218/1‑139 (MQ=37)
tCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 1:62197/139‑1 (MQ=37)
tCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 2:1605612/139‑1 (MQ=37)
cccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTcc > 1:1235341/1‑139 (MQ=255)
cccACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTcc > 1:1341190/1‑139 (MQ=255)
cacacaGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa < 2:295422/139‑1 (MQ=255)
cacacaGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa < 2:566921/139‑1 (MQ=255)
cacacaGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa > 1:1293837/1‑139 (MQ=255)
cacaGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc > 1:775490/1‑139 (MQ=255)
caGATTGTCTGATAAATAGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCAt > 2:1032596/1‑139 (MQ=255)
aTTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCt > 1:1002703/1‑139 (MQ=255)
aTTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCt < 2:1293837/139‑1 (MQ=255)
aTTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCt > 2:1200722/1‑139 (MQ=255)
aTTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCt > 1:24457/1‑139 (MQ=255)
tCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGa > 2:1592475/1‑139 (MQ=255)
tGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAg > 1:1492583/1‑139 (MQ=255)
tGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAg > 1:876336/1‑139 (MQ=255)
tGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAg > 1:1268614/1‑139 (MQ=255)
aTAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttgt > 2:546762/1‑119 (MQ=255)
aTAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttgt < 1:546762/119‑1 (MQ=255)
aTTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTc < 1:1150250/139‑1 (MQ=255)
aTTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTc < 2:1478976/139‑1 (MQ=255)
tGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 1:782016/120‑1 (MQ=255)
tGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc > 2:782016/1‑120 (MQ=255)
tGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCAc > 2:422801/1‑139 (MQ=255)
ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGt > 2:440033/1‑139 (MQ=255)
ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGt < 1:1032596/139‑1 (MQ=255)
aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACTATCCTGTGTAGTGTTTCACGTTg > 2:445424/1‑139 (MQ=255)
aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgt < 2:1419775/139‑1 (MQ=255)
aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgt < 1:422801/139‑1 (MQ=255)
agagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTgtc < 1:1902/139‑1 (MQ=255)
cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATc > 2:1107584/1‑113 (MQ=255)
cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATc < 1:1107584/113‑1 (MQ=255)
cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGtct > 2:1378830/1‑139 (MQ=255)
gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCa > 1:433082/1‑139 (MQ=255)
gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa > 1:1032567/1‑106 (MQ=255)
gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGa < 2:1032567/106‑1 (MQ=255)
gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc > 1:780348/1‑108 (MQ=255)
gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGAcc < 2:780348/108‑1 (MQ=255)
gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCa > 2:1206394/1‑139 (MQ=255)
gCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACg > 2:842033/1‑139 (MQ=255)
gCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACg > 1:593781/1‑139 (MQ=255)
cGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACgg < 2:1260399/139‑1 (MQ=255)
cGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCTGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACgg < 2:991568/139‑1 (MQ=255)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt > 2:1115852/1‑84 (MQ=32)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt < 1:1115852/84‑1 (MQ=32)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAAGCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTGCCGACCATc > 1:1069755/1‑105 (MQ=255)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATc < 2:1069755/105‑1 (MQ=255)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACg < 2:1083469/122‑1 (MQ=255)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACg > 1:1083469/1‑122 (MQ=255)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 1:1378830/139‑1 (MQ=255)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 2:346298/139‑1 (MQ=255)
aCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAg < 1:445424/139‑1 (MQ=255)
cgcgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 2:1341190/139‑1 (MQ=255)
cgcgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAgg < 1:1206394/139‑1 (MQ=255)
cgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGgcg < 2:1492583/139‑1 (MQ=255)
cgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGgcg < 2:1640218/139‑1 (MQ=255)
cgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGgcg < 2:801611/139‑1 (MQ=255)
cgGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGgcg < 1:1200722/139‑1 (MQ=255)
ggCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGgcgc < 2:1268614/139‑1 (MQ=255)
gCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCa > 1:1147410/1‑139 (MQ=255)
gCTCACTGTCGCGAGGTGGCGTATATTACACTTTCCTCTCTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAgg < 2:1002703/139‑1 (MQ=255)
gTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCa > 1:1370940/1‑139 (MQ=255)
gTCGCGAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCa > 2:8491/1‑139 (MQ=255)
cgcgAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGaa < 2:274263/91‑1 (MQ=255)
cgcgAGGTGGCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGaa > 1:274263/1‑91 (MQ=255)
gCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGcac < 1:440033/139‑1 (MQ=255)
gCGTATATTACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGcac > 1:178754/1‑139 (MQ=255)
ttACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAgg > 1:385992/1‑114 (MQ=255)
ttACACTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAgg < 2:385992/114‑1 (MQ=255)
|
CCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTCCGACCATCCTGTGAAGTGTTTCACGTTGTCGTCTCAACGGAGGCGCATTATAGGGATCCCAATTTTTTGCAC > NC_000913/3428857‑3429081
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
