Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F1 I2 R1 97 53.3 2484976 94.5% 2348302 111.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,073,079 T→C L514P (CTG→CCG)  flu → CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,073,0790TC100.0% 771.0 / NA 196L514P (CTG→CCG) fluCP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (104/92);  total (104/92)

Only 100 of 205 total aligned reads displayed.

AACGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCT  >  NC_000913/2072943‑2073208
                                                                                                                                        |                                                                                                                                 
aacGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCcga                                                                                                                                 >  2:661494/1‑139 (MQ=255)
  cGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCcgaat                                                                                                                               >  1:344223/1‑139 (MQ=255)
  cGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCcgaat                                                                                                                               >  1:291789/1‑139 (MQ=255)
       cccTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAgg                                                                                                                          <  1:1225219/139‑1 (MQ=255)
         cTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCa                                                                                                                        <  2:267603/139‑1 (MQ=255)
            aCCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgc                                                                                                                     >  2:434376/1‑139 (MQ=255)
             ccATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgct                                                                                                                    <  2:607839/139‑1 (MQ=255)
                 ccGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacg                                                                                                                >  1:680481/1‑139 (MQ=255)
                 ccGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacg                                                                                                                <  1:375739/139‑1 (MQ=255)
                    tGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacgctg                                                                                                             <  2:1003381/139‑1 (MQ=255)
                     gAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCAcgctgacgctga                                                                                                            <  1:1147682/139‑1 (MQ=255)
                       aGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAAc                                                                                                          <  1:985326/139‑1 (MQ=255)
                        ggCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACg                                                                                                         >  2:1108539/1‑139 (MQ=255)
                        ggCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACg                                                                                                         >  1:642746/1‑139 (MQ=255)
                         gCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGa                                                                                                        <  2:216396/139‑1 (MQ=255)
                         gCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGa                                                                                                        <  2:969653/139‑1 (MQ=255)
                                  tCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGt                                                                                               <  2:1234401/139‑1 (MQ=255)
                                      gCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTcacc                                                                                           <  2:473264/139‑1 (MQ=255)
                                       cAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTcacca                                                                                          >  1:1196571/1‑139 (MQ=255)
                                              gCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGt                                                                                   >  2:15238/1‑139 (MQ=255)
                                              gCTCTCTCACCAGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGt                                                                                   >  1:1166277/1‑139 (MQ=255)
                                                tctctcACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACTCGAATGAAGGCAcgctgacgctga                                                                                                            >  1:1206437/1‑112 (MQ=255)
                                                 ctctcACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCAt                                                                                >  2:253335/1‑139 (MQ=255)
                                                    tcACTGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGc                                                                             >  1:626616/1‑139 (MQ=255)
                                                     cACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                            <  2:630456/139‑1 (MQ=255)
                                                          gTAACGGCCGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGTCACGCTGACTCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  2:763390/139‑1 (MQ=255)
                                                          gTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  1:1071983/139‑1 (MQ=255)
                                                          gTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  1:962315/139‑1 (MQ=255)
                                                          gTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  2:344223/139‑1 (MQ=255)
                                                          gTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  1:461799/139‑1 (MQ=255)
                                                          gTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  2:705824/139‑1 (MQ=255)
                                                            aaCGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGcgcg                                                                     >  2:120820/1‑139 (MQ=255)
                                                              cGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACCCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                            <  2:1067386/130‑1 (MQ=255)
                                                               ggCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTa                                                                  <  2:1176077/139‑1 (MQ=255)
                                                                gCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTAc                                                                 <  1:249862/139‑1 (MQ=255)
                                                                    cGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGcc                                                             >  1:237343/1‑139 (MQ=255)
                                                                    cGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGcc                                                             >  1:133064/1‑139 (MQ=255)
                                                                    cGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGcc                                                             <  2:133064/139‑1 (MQ=255)
                                                                      tGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTAc                                                                                                  >  1:233535/1‑100 (MQ=255)
                                                                                aGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacgctg                                                                                                             <  2:206794/79‑1 (MQ=255)
                                                                                aGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacgctg                                                                                                             >  1:206794/1‑79 (MQ=255)
                                                                                 ggAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCg                                                >  2:923107/1‑139 (MQ=255)
                                                                                  gAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCgg                                               >  1:816258/1‑139 (MQ=255)
                                                                                  gAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCgg                                               <  2:310390/139‑1 (MQ=255)
                                                                                  gAAGTGGCACACGCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCgg                                               <  1:471871/139‑1 (MQ=255)
                                                                                       ggCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  1:921721/110‑1 (MQ=255)
                                                                                       ggCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          >  2:143777/1‑139 (MQ=255)
                                                                                        gCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGa                                                                                      <  1:877207/94‑1 (MQ=255)
                                                                                         cacaCTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACt                                        <  2:1147570/139‑1 (MQ=255)
                                                                                                actGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                            >  1:795982/1‑96 (MQ=255)
                                                                                                actGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCgg                                                                    <  2:180347/104‑1 (MQ=255)
                                                                                                actGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCgg                                                                    >  1:180347/1‑104 (MQ=255)
                                                                                                actGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          >  1:497951/1‑130 (MQ=255)
                                                                                                actGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGa                                 >  1:1172623/1‑139 (MQ=255)
                                                                                                  tGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGa                                                                                      <  1:1144171/84‑1 (MQ=255)
                                                                                                  tGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGa                                                                                      >  2:1144171/1‑84 (MQ=255)
                                                                                                  tGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTg                                                    <  2:1098550/118‑1 (MQ=255)
                                                                                                    tCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACgg                             <  1:736723/139‑1 (MQ=255)
                                                                                                      aGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  2:384074/95‑1 (MQ=255)
                                                                                                        cAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTAc                                                                 <  2:752783/99‑1 (MQ=255)
                                                                                                        cAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACa                                                                >  2:519631/1‑100 (MQ=255)
                                                                                                        cAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGcc                         >  1:695757/1‑139 (MQ=255)
                                                                                                        cAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGcc                         >  1:530182/1‑139 (MQ=255)
                                                                                                          acacCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAt                       >  2:740728/1‑139 (MQ=255)
                                                                                                           caccacACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGTTGAACGGTGCCAtt                      <  2:797562/139‑1 (MQ=255)
                                                                                                           caccacACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGAAGCACTGTGCTGAACGGTGCCAtt                      >  1:691420/1‑139 (MQ=255)
                                                                                                            accacACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTg                     >  1:591125/1‑139 (MQ=255)
                                                                                                              cacaCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGaa                                                                                                           <  1:1100299/51‑1 (MQ=255)
                                                                                                              cacaCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          >  1:94555/1‑116 (MQ=255)
                                                                                                              cacaCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          <  2:94555/116‑1 (MQ=255)
                                                                                                              cacaCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAc                   >  2:725153/1‑139 (MQ=255)
                                                                                                              cacaCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAc                   <  2:1165994/139‑1 (MQ=255)
                                                                                                                cacTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          <  1:424579/114‑1 (MQ=255)
                                                                                                                cacTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          >  2:424579/1‑114 (MQ=255)
                                                                                                                   tCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCAc              <  1:15238/139‑1 (MQ=255)
                                                                                                                    cACCCAGGAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACg             <  1:1007695/139‑1 (MQ=255)
                                                                                                                    cACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACg             <  1:40189/139‑1 (MQ=255)
                                                                                                                     aCCCAGAGAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTcacc                                                                                           >  1:755368/1‑60 (MQ=255)
                                                                                                                     aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTAcc                                                                                                 <  2:972287/54‑1 (MQ=255)
                                                                                                                     aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTAcc                                                                                                 >  1:972287/1‑54 (MQ=255)
                                                                                                                      cccAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGaa                                                                                                           <  2:210671/43‑1 (MQ=255)
                                                                                                                      cccAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                            >  2:1031834/1‑74 (MQ=255)
                                                                                                                      cccAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                            <  1:1031834/74‑1 (MQ=255)
                                                                                                                      cccAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  2:237193/79‑1 (MQ=255)
                                                                                                                      cccAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAcccc                >  2:1130117/1‑134 (MQ=255)
                                                                                                                        cAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATg         <  2:298841/139‑1 (MQ=255)
                                                                                                                           aaaGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                            <  2:877100/69‑1 (MQ=255)
                                                                                                                           aaaGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          <  2:64337/103‑1 (MQ=255)
                                                                                                                               ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                       <  1:304537/70‑1 (MQ=255)
                                                                                                                               ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAtt                      <  2:405255/119‑1 (MQ=255)
                                                                                                                               ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct  >  2:497142/1‑139 (MQ=255)
                                                                                                                               ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct  >  1:655866/1‑139 (MQ=255)
                                                                                                                               ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct  >  2:591044/1‑139 (MQ=255)
                                                                                                                               ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct  >  1:50399/1‑139 (MQ=255)
                                                                                                                               ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct  >  1:1059532/1‑139 (MQ=255)
                                                                                                                                 gTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGa                                                                                      >  2:775896/1‑53 (MQ=255)
                                                                                                                                 gTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          <  1:555762/97‑1 (MQ=255)
                                                                                                                                 gTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                          >  2:555762/1‑97 (MQ=255)
                                                                                                                                 gTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACtgtg                                     >  1:1143365/1‑102 (MQ=255)
                                                                                                                                    aaCCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa            <  2:906355/124‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                 
AACGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCT  >  NC_000913/2072943‑2073208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A