Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F1 I1 R1 82 28.6 1225488 97.4% 1193625 116.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,073,079 T→C L514P (CTG→CCG)  flu → CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,073,0790TC100.0% 347.3 / NA 89L514P (CTG→CCG) fluCP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (51/38);  total (51/38)

CGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCG  >  NC_000913/2072945‑2073210
                                                                                                                                      |                                                                                                                                   
cGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCcgaat                                                                                                                                 >  2:262590/1‑139 (MQ=255)
  aTACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCcgaatga                                                                                                                               >  1:398328/1‑139 (MQ=255)
   tACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCcgaatgaa                                                                                                                              >  2:492759/1‑139 (MQ=255)
        tGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCac                                                                                                                         >  2:201317/1‑139 (MQ=255)
          aCCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgc                                                                                                                       >  2:64273/1‑139 (MQ=255)
           ccATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgct                                                                                                                      <  2:449903/139‑1 (MQ=255)
            cATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctg                                                                                                                     >  1:512705/1‑139 (MQ=255)
             aTCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctga                                                                                                                    >  2:164715/1‑139 (MQ=255)
             aTCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctga                                                                                                                    <  1:209822/139‑1 (MQ=255)
               ccGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacg                                                                                                                  >  1:278040/1‑139 (MQ=255)
                cGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacgc                                                                                                                 >  1:504693/1‑139 (MQ=255)
                  tGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacgctg                                                                                                               <  2:474321/139‑1 (MQ=255)
                    aaGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGaa                                                                                                             <  2:398328/139‑1 (MQ=255)
                      ggCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGG‑AAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGa                                                                                                          >  1:62263/1‑139 (MQ=255)
                          aTGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGTGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAgg                                                                                                                            <  1:387256/118‑1 (MQ=255)
                          aTGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAgg                                                                                                                            >  2:387256/1‑118 (MQ=255)
                                 ccTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTc                                                                                                >  1:450194/1‑139 (MQ=255)
                                     cAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTcacca                                                                                            >  2:28800/1‑139 (MQ=255)
                                            gCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGt                                                                                     >  2:267102/1‑139 (MQ=255)
                                            gCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGt                                                                                     >  2:550095/1‑139 (MQ=255)
                                            gCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGt                                                                                     >  2:404752/1‑139 (MQ=255)
                                            gCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGt                                                                                     >  2:211135/1‑139 (MQ=255)
                                             ctctctCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTc                                                                                    >  1:132429/1‑139 (MQ=255)
                                             ctctctCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTc                                                                                    <  2:163338/139‑1 (MQ=255)
                                             ctctctCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTc                                                                                    >  1:68480/1‑139 (MQ=255)
                                                   cACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                              <  1:262590/139‑1 (MQ=255)
                                                   cACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                              <  1:564365/139‑1 (MQ=255)
                                                   cACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                              <  1:331936/139‑1 (MQ=255)
                                                        gTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                         <  1:64273/139‑1 (MQ=255)
                                                            cGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTcacc                                                                                             <  1:106711/115‑1 (MQ=255)
                                                            cGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTcacc                                                                                             >  2:106711/1‑115 (MQ=255)
                                                            cGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGt                                                                     >  1:478964/1‑139 (MQ=255)
                                                              gCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTAc                                                                   <  2:478964/139‑1 (MQ=255)
                                                              gCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTAc                                                                   >  1:359238/1‑139 (MQ=255)
                                                                aGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                              >  2:129373/1‑126 (MQ=255)
                                                                aGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                              <  1:129373/126‑1 (MQ=255)
                                                                aGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAg                                                                 <  2:504693/139‑1 (MQ=255)
                                                                  cGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGcc                                                               >  1:496445/1‑139 (MQ=255)
                                                                                gAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCgg                                                 <  2:551491/139‑1 (MQ=255)
                                                                                     ggCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                            <  1:203198/139‑1 (MQ=255)
                                                                                            tcactGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGAc                                                                                                         <  2:35912/71‑1 (MQ=255)
                                                                                            tcactGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGAc                                                                                                         >  1:35912/1‑71 (MQ=255)
                                                                                               ctGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGaa                                  <  1:492759/139‑1 (MQ=255)
                                                                                                tGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAAc                                 >  1:483273/1‑139 (MQ=255)
                                                                                                    aGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCa                                                                                   <  2:165160/85‑1 (MQ=255)
                                                                                                    aGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCa                                                                                   >  1:165160/1‑85 (MQ=255)
                                                                                                    aGCAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTg                             >  2:62077/1‑139 (MQ=255)
                                                                                                      cAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTAcc                                                                                                   <  1:300645/67‑1 (MQ=255)
                                                                                                      cAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTAcc                                                                                                   >  2:300645/1‑67 (MQ=255)
                                                                                                      cAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                            >  2:602237/1‑122 (MQ=255)
                                                                                                      cAACACCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                            <  1:602237/122‑1 (MQ=255)
                                                                                                        acacCACACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAt                         >  2:533175/1‑139 (MQ=255)
                                                                                                         caccacACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAtt                        >  1:285707/1‑139 (MQ=255)
                                                                                                           ccacACTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGa                      <  2:68480/139‑1 (MQ=255)
                                                                                                            cacaCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAg                                                                                                       <  2:261902/57‑1 (MQ=255)
                                                                                                            cacaCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAg                                                                                                       >  1:261902/1‑57 (MQ=255)
                                                                                                            cacaCTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAc                     >  2:7017/1‑139 (MQ=255)
                                                                                                              cacTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgct                                                                                                                      >  2:301252/1‑40 (MQ=255)
                                                                                                              cacTCACCCAGAAAGCCGTCAACCCGAATGAAGGCacgct                                                                                                                      <  1:301252/40‑1 (MQ=255)
                                                                                                              cacTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                         <  2:96715/85‑1 (MQ=255)
                                                                                                              cacTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                         >  1:96715/1‑85 (MQ=255)
                                                                                                                cTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGa                                                                                        <  1:419716/68‑1 (MQ=255)
                                                                                                                cTCACCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGa                                                                                        >  2:419716/1‑68 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacgctg                                                                                                               >  2:373013/1‑42 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCacgctgacgctg                                                                                                               <  1:373013/42‑1 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTAGCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCATTGTGCTGAACGGTGCCATTGACCCCACGa              >  2:412671/1‑139 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                         <  2:171415/80‑1 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                         >  1:171415/1‑80 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                         >  2:540159/1‑80 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                         <  1:540159/80‑1 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGcc                                                               >  2:178897/1‑90 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGcc                                                               <  1:178897/90‑1 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                            <  2:61557/109‑1 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                            >  1:61557/1‑109 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACg                                >  1:100869/1‑121 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACg                                <  2:100869/121‑1 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa              >  1:428954/1‑139 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa              >  2:862/1‑139 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa              >  1:597953/1‑139 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa              >  2:483704/1‑139 (MQ=255)
                                                                                                                   aCCCAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGa              >  1:429434/1‑139 (MQ=255)
                                                                                                                    cccAGAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGaa             <  1:267102/139‑1 (MQ=255)
                                                                                                                        gAAAGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCTATTGACCCCACGAATGTc         <  1:340023/139‑1 (MQ=255)
                                                                                                                         aaaGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                              <  1:41563/69‑1 (MQ=255)
                                                                                                                         aaaGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCt                                                                              >  2:41563/1‑69 (MQ=255)
                                                                                                                         aaaGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGCCa        >  1:141890/1‑139 (MQ=255)
                                                                                                                           aGCCGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCAct      <  1:7017/139‑1 (MQ=255)
                                                                                                                             ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                         <  1:372040/70‑1 (MQ=255)
                                                                                                                             ccGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGAACCGTCACCACGGATGTCATTGCTCAgcg                                                                         >  2:372040/1‑70 (MQ=255)
                                                                                                                              cGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                            <  1:343007/98‑1 (MQ=255)
                                                                                                                              cGTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                            >  2:343007/1‑98 (MQ=255)
                                                                                                                               gTCAACCCGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCg  >  2:37806/1‑139 (MQ=255)
                                                                                                                                      |                                                                                                                                   
CGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCG  >  NC_000913/2072945‑2073210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A