Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
66 |
20.9 |
912876 |
97.7% |
891879 |
114.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,035,112 |
T→C |
pseudogene (400/531 nt) |
yedS → |
pseudogene, outer membrane protein homology, putative outer membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,035,112 | 0 | T | C | 100.0%
| 92.2
/ NA
| 25 | pseudogene (400/531 nt) | yedS | pseudogene, outer membrane protein homology, putative outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/13); total (12/13) |
TTTGGCCTGCGCCCGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACTACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTT > NC_000913/2034977‑2035239
|
ttgggCCTGCGCCCGTCCATCGCTTACCTGCAATCTAGAGGTAAGGATTTGGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTaccact < 2:36135/136‑1 (MQ=255)
tGGCCTGCGCCCGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTc > 2:409006/1‑139 (MQ=255)
gCCTGCGCCCGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTcaa > 1:313162/1‑139 (MQ=255)
cccGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAAc < 1:409006/139‑1 (MQ=255)
cGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACAt < 1:447873/139‑1 (MQ=255)
gTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATg > 2:26266/1‑139 (MQ=255)
tCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCAc < 1:26266/139‑1 (MQ=255)
gTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCa < 2:47886/138‑1 (MQ=255)
gTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCa > 1:47886/1‑138 (MQ=255)
aGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATg < 2:406796/110‑1 (MQ=255)
aGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATg > 1:406796/1‑110 (MQ=255)
aGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAAcat > 1:64591/1‑137 (MQ=255)
aGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACct > 1:158013/1‑139 (MQ=255)
ggCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGAt < 2:158013/139‑1 (MQ=255)
ggCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGAt < 2:313162/139‑1 (MQ=255)
cGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCg < 1:189561/139‑1 (MQ=255)
cTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTAc < 2:138353/125‑1 (MQ=255)
cTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTAc > 1:138353/1‑125 (MQ=255)
gTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGAt > 1:141220/1‑93 (MQ=255)
gTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGAt < 2:141220/93‑1 (MQ=255)
ttGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACctgctg > 2:8076/1‑71 (MQ=255)
ttGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACctgctg < 1:8076/71‑1 (MQ=255)
tatTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTAc < 2:64591/139‑1 (MQ=255)
gTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGtt > 1:117916/1‑139 (MQ=255)
aCCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAg < 2:135017/124‑1 (MQ=255)
aCCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAg > 1:135017/1‑124 (MQ=255)
|
TTTGGCCTGCGCCCGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACTACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTT > NC_000913/2034977‑2035239
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
