Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F1 I2 R1	78	65.3	3016648	94.6%	2853749	111.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,068,541	T→C	T90A (ACA→GCA)	argO ←	arginine transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,068,541	0	T	C	100.0%	261.1 / NA	68	T90A (ACA→GCA)	argO	arginine transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (44/24); total (44/24)

CAGTACAACAAAAGTATCCAGGTAAACATGCGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAATCGCTG  >  NC_000913/3068410‑3068674

cAGTACAACAAAAGTATCCAGGTAAACATGCGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACACAATATTACTGCTCATTGCTGCTTTaaaa                                                                                                                                <  1:1007845/139‑1 (MQ=255)

     caacaaAAGTATCCAGGTAAACATGCGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGcc                                                                                                                           <  1:375410/139‑1 (MQ=255)

             gTATCCAGGTAAACATGCGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGCCTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCAt                                                                                                                   >  2:925577/1‑139 (MQ=255)

             gTATCCAGGTAAACATGCGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCAt                                                                                                                   >  2:1088116/1‑139 (MQ=255)

             gTATCCAGGTAAACATGCGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCAt                                                                                                                   >  1:1342906/1‑139 (MQ=255)

                   aGGTAAACATGCGGATTCAGACAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACGTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACcaca                                                                                                             <  2:1121686/139‑1 (MQ=255)

                              cGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCt                                                                                                  >  1:620165/1‑139 (MQ=255)

                              cGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCt                                                                                                  >  1:631037/1‑139 (MQ=255)

                              cGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCt                                                                                                  >  1:40801/1‑139 (MQ=255)

                              cGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCt                                                                                                  >  2:743967/1‑139 (MQ=255)

                                 aTTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTAcg                                                                                               >  1:525814/1‑139 (MQ=255)

                                           gTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAgg                                                                                     >  1:1111810/1‑139 (MQ=255)

                                           gTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAgg                                                                                     >  1:831273/1‑139 (MQ=255)

                                                 gCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCa                                                                               >  1:713995/1‑139 (MQ=255)

                                                            ggCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAAc                                                                    >  2:817410/1‑139 (MQ=255)

                                                                aTAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACcac                                                                                                              >  2:497495/1‑93 (MQ=255)

                                                                aTAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACcac                                                                                                              <  1:497495/93‑1 (MQ=255)

                                                                 tAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACgg                                                               >  1:973749/1‑139 (MQ=255)

                                                                     tttCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAATACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGAc                                                           <  2:973749/139‑1 (MQ=255)

                                                                     tttCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGAc                                                           <  1:817410/139‑1 (MQ=255)

                                                                     tttCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGAc                                                           <  1:1088116/139‑1 (MQ=255)

                                                                           tCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATc                                                     >  1:223020/1‑139 (MQ=255)

                                                                              gCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAAt                                                  >  1:493407/1‑139 (MQ=255)

                                                                              gCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAAt                                                  >  2:18628/1‑139 (MQ=255)

                                                                                       cATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCa                                                                                                                    <  2:581441/64‑1 (MQ=255)

                                                                                       cATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCa                                                                                                                    >  1:581441/1‑64 (MQ=255)

                                                                                         tGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCCAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAg                                                                              <  2:1065415/100‑1 (MQ=255)

                                                                                         tGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACcac                                                                                                              >  2:601598/1‑68 (MQ=255)

                                                                                         tGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACcac                                                                                                              <  1:601598/68‑1 (MQ=255)

                                                                                         tGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAg                                                                              >  1:1065415/1‑100 (MQ=255)

                                                                                         tGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGcc                                       >  1:1116162/1‑139 (MQ=255)

                                                                                         tGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGcc                                       >  2:1132601/1‑139 (MQ=255)

                                                                                         tGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGcc                                       >  1:1491251/1‑139 (MQ=255)

                                                                                              tCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAGAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCg                                                             >  1:986215/1‑112 (MQ=255)

                                                                                              tCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCTAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAATCACGGCg                                                             <  2:986215/112‑1 (MQ=255)

                                                                                              tCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCaa                                  >  1:1106129/1‑139 (MQ=255)

                                                                                               cGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGccc                                                                                         >  1:1238605/1‑83 (MQ=255)

                                                                                               cGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGccc                                                                                         <  2:1238605/83‑1 (MQ=255)

                                                                                               cGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCg                                                             <  1:806397/111‑1 (MQ=255)

                                                                                               cGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCg                                                             >  2:806397/1‑111 (MQ=255)

                                                                                                  cgcTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGcc                                                                          >  1:613891/1‑95 (MQ=255)

                                                                                                  cgcTGGCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGcc                                                                          <  2:613891/95‑1 (MQ=255)

                                                                                                       gCTAACTCAATATTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCACgg                         >  2:1002965/1‑139 (MQ=255)

                                                                                                              cAATATTACTACTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAAt                  <  1:142991/139‑1 (MQ=255)

                                                                                                                 tatTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCa                                                                                                                    <  1:912049/38‑1 (MQ=255)

                                                                                                                 tatTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCa                                                                                                                    >  2:912049/1‑38 (MQ=255)

                                                                                                                 tatTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATcc                            <  1:333900/126‑1 (MQ=255)

                                                                                                                 tatTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATcc                            >  2:333900/1‑126 (MQ=255)

                                                                                                                 tatTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAg               >  1:965200/1‑139 (MQ=255)

                                                                                                                 tatTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAg               <  1:743967/139‑1 (MQ=255)

                                                                                                                 tatTACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAg               >  1:472368/1‑139 (MQ=255)

                                                                                                                   ttACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGa             <  1:18628/139‑1 (MQ=255)

                                                                                                                   ttACTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGa             <  2:472368/139‑1 (MQ=255)

                                                                                                                     aCTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGAcc           >  2:281981/1‑139 (MQ=255)

                                                                                                                      cTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGa             >  1:1166998/1‑136 (MQ=255)

                                                                                                                      cTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGa             <  2:1166998/136‑1 (MQ=255)

                                                                                                                      cTGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCa          >  1:1151749/1‑139 (MQ=255)

                                                                                                                       tGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGccc                                                                                         <  2:825826/59‑1 (MQ=255)

                                                                                                                       tGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGccc                                                                                         >  1:825826/1‑59 (MQ=255)

                                                                                                                       tGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGAc                                                                                 >  2:115209/1‑67 (MQ=255)

                                                                                                                       tGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGAc                                                                                 <  1:115209/67‑1 (MQ=255)

                                                                                                                       tGCTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCaa         >  1:422906/1‑139 (MQ=255)

                                                                                                                         cTCATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAAt       >  1:866500/1‑139 (MQ=255)

                                                                                                                           cATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAAc                                                                    >  1:125234/1‑76 (MQ=255)

                                                                                                                           cATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAAc                                                                    <  2:125234/76‑1 (MQ=255)

                                                                                                                           cATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAATCg     >  1:1105249/1‑139 (MQ=255)

                                                                                                                           cATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAATCg     >  2:587223/1‑139 (MQ=255)

                                                                                                                           cATTGCTGCTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAATCg     >  1:729807/1‑139 (MQ=255)

                                                                                                                              tgctgcTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCg                                                             >  1:532710/1‑80 (MQ=255)

                                                                                                                              tgctgcTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCg                                                             <  2:532710/80‑1 (MQ=255)

                                                                                                                              tgctgcTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGAc                                                           <  2:370353/82‑1 (MQ=255)

                                                                                                                              tgctgcTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGAc                                                           >  1:370353/1‑82 (MQ=255)

                                                                                                                              tgctgcTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAATCGCTg  >  2:1209960/1‑139 (MQ=255)

CAGTACAACAAAAGTATCCAGGTAAACATGCGGATTCAGCCAGGTCACTGCCAACATGGTGGCGATAATTTTCCATCTGCCTTGCTTCATGACTTCGGCGCTGGCTAACTCAATATTACTGCTCATTGCTGTTTTAAAAGCGCCAAAACCATACCACAGCAAGAAGGCTACGCCGCCCCAGGTGACCAGCGCCAGCAACCACGGCGACTGCATCAATAACGCGCTGCCACCAAAAATCCCGGCGCAAATCAGGACCAAATCGCTG  >  NC_000913/3068410‑3068674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A