Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I2 R1
|
78 |
65.3 |
3016648 |
94.6% |
2853749 |
111.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,081,402 |
G→A |
T78T (ACC→ACT) |
tktA ← |
transketolase 1, thiamine triphosphate‑binding |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,081,402 | 0 | G | A | 100.0%
| 233.0
/ NA
| 66 | T78T (ACC→ACT) | tktA | transketolase 1, thiamine triphosphate‑binding |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (34/32); total (34/32) |
CTGCGTTGGCAATACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCGGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCACGCCACAGGACTTCGGCAATGTC > NC_000913/3081266‑3081533
|
cTGCGTTGGCAATACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGTGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGt < 1:341801/139‑1 (MQ=255)
cAATACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcag < 1:697754/139‑1 (MQ=255)
cAATACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcag < 2:495497/139‑1 (MQ=255)
cAATACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcag < 2:912315/139‑1 (MQ=255)
aaTACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagc < 1:87793/139‑1 (MQ=255)
aTACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca < 1:649960/139‑1 (MQ=255)
aTACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca < 2:716751/139‑1 (MQ=255)
aCCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAgg > 2:96913/1‑139 (MQ=255)
cccTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGc < 1:913451/139‑1 (MQ=255)
gACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTg > 2:86875/1‑137 (MQ=255)
gACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTg < 1:86875/137‑1 (MQ=255)
gACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTa > 2:393540/1‑139 (MQ=255)
gCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca > 1:1361428/1‑126 (MQ=255)
gCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca < 2:1361428/126‑1 (MQ=255)
gCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAg > 2:919834/1‑139 (MQ=255)
ccGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATgg < 1:919834/139‑1 (MQ=255)
ccGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATgg > 1:1416859/1‑139 (MQ=255)
cGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGc > 1:953025/1‑123 (MQ=255)
cGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGc < 2:953025/123‑1 (MQ=255)
gtggtTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGt > 1:845064/1‑139 (MQ=255)
ccACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGtt > 2:1320847/1‑139 (MQ=255)
cAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAg > 2:487778/1‑139 (MQ=255)
cAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTC‑TCCATCGGCAGATCGTAACCAGTGAGGTgcag < 1:1387918/99‑1 (MQ=255)
cAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTC‑TCCATCGGCAGATCGTAACCAGTGAGGTgcag > 2:1387918/1‑99 (MQ=255)
gCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcag < 1:601012/98‑1 (MQ=255)
gCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcag > 2:601012/1‑98 (MQ=255)
gtgtAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGa > 1:1498428/1‑139 (MQ=255)
gtAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca > 1:131279/1‑95 (MQ=255)
gtAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca < 2:131279/95‑1 (MQ=255)
tAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca > 2:437128/1‑94 (MQ=255)
tAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca < 1:437128/94‑1 (MQ=255)
cACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGcggtca > 2:1447287/1‑139 (MQ=255)
ttCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcag < 2:242309/84‑1 (MQ=255)
ttCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcag > 1:242309/1‑84 (MQ=255)
ttCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAgg > 1:1129291/1‑88 (MQ=255)
ttCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAgg < 2:1129291/88‑1 (MQ=255)
ttCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGcggtcacgg > 2:850091/1‑139 (MQ=255)
tCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGcggtcacggt < 2:1498428/139‑1 (MQ=255)
tCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGcggtcacggt < 2:203470/139‑1 (MQ=255)
ccGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGcggtcacggtc > 1:64815/1‑139 (MQ=255)
ggTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca < 2:888566/81‑1 (MQ=255)
ggTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca > 1:888566/1‑81 (MQ=255)
ggTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGc > 2:458227/1‑139 (MQ=255)
cccGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGc > 1:1312657/1‑97 (MQ=255)
cccGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGc < 2:1312657/97‑1 (MQ=255)
cccGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAgg > 1:495910/1‑139 (MQ=255)
gTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGAt < 2:1416859/139‑1 (MQ=255)
tAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca < 2:484409/66‑1 (MQ=255)
tAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgcagca > 1:484409/1‑66 (MQ=255)
gCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGtt < 2:845064/139‑1 (MQ=255)
cAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTg > 1:1355094/1‑64 (MQ=255)
cAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTg < 2:1355094/64‑1 (MQ=255)
cAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGcggtcacggt < 1:852687/113‑1 (MQ=255)
cAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGcggtcacggt > 2:852687/1‑113 (MQ=255)
cAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTtg > 2:434576/1‑139 (MQ=255)
gACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGttt < 1:850091/139‑1 (MQ=255)
tttttCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgca < 2:1094963/43‑1 (MQ=255)
tttttCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTgca > 1:1094963/1‑43 (MQ=255)
tttttCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGTGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAAt > 2:111254/1‑139 (MQ=255)
tttCAGTTCTTCCATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCa > 1:602147/1‑139 (MQ=255)
ccATCGGCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCACGCCACAGGAc > 1:851934/1‑139 (MQ=255)
ggCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCACGCCACAGGACTTCgg < 2:602147/139‑1 (MQ=255)
ggCAGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCACGCCACAGGACTTCgg < 1:1447287/139‑1 (MQ=255)
aGATCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCACGCCACAGGACTTCGGCaa < 1:393540/139‑1 (MQ=255)
aTCGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCACGCCACAGGACTTCGGCAATg > 1:1293071/1‑139 (MQ=255)
cGTAACCAGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCACGCCACAGGACTTCGGCAATGTc > 2:606018/1‑139 (MQ=255)
|
CTGCGTTGGCAATACCCTGACCCAGCGGACCGGTGGTGGTTTCCACACCAGCGGTGTAACCCACTTCCGGGTGACCCGGAGTTTTAGAGTGCAGCTGACGGAAGTTTTTCAGTTCTTCCATCGGCAGATCGTAACCGGTGAGGTGCAGCAGGCTGTAGATCAGCATGGAGCCGTGGCCGTTGGACAGCACGAAGCGGTCACGGTCAGCCCAGGACGGATTCTGCGGGTTGTGTTTCAGGAAATCACGCCACAGGACTTCGGCAATGTC > NC_000913/3081266‑3081533
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
