Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F1 I2 R1
|
78 |
48.0 |
2243616 |
94.8% |
2126947 |
114.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,079,101 |
A→G |
intergenic (+663/‑196) |
yiiD → / → yiiE |
GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,079,101 | 0 | A | G | 100.0%
| 194.2
/ NA
| 51 | intergenic (+663/‑196) | yiiD/yiiE | GNAT family putative N‑acetyltransferase/CopG family putative transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (26/25); total (26/25) |
GGTGGCAGTACTGACCGGTCTGTGATGAAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCACCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGAT > NC_000913/4078966‑4079234
|
ggtggCAGTACTGACCGGTCTGTGATGAAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGccc < 1:1118199/139‑1 (MQ=255)
tGACCGGTCTGTGATGAAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATcc < 1:672132/139‑1 (MQ=255)
ggTCTGTGATGAAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGc < 1:258537/139‑1 (MQ=255)
tgatgaAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAAc < 1:1054230/139‑1 (MQ=255)
tgatgaAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAAc < 2:99247/139‑1 (MQ=255)
gaAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTaaa < 2:97588/139‑1 (MQ=255)
aGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCa > 2:802917/1‑139 (MQ=255)
ttAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCAttt > 1:471383/1‑139 (MQ=255)
aaTTTCACCTTATATCCTGATGCTGTTAGGATTCTGACGTTTTTCGTCTACACCATTCAGAGTATGCAAATAAATATCTCTTAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCAtttgt < 1:799608/139‑3 (MQ=255)
tCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGt < 2:1089880/139‑1 (MQ=255)
aTCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGa < 2:275014/139‑1 (MQ=255)
tCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGaa < 2:471383/139‑1 (MQ=255)
ggTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCAttttt < 1:700881/121‑1 (MQ=255)
ggTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCAttttt > 2:700881/1‑121 (MQ=255)
gTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAaacaac > 1:21094/1‑139 (MQ=255)
cTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGc > 1:403735/1‑139 (MQ=255)
gTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCaa < 2:802336/139‑1 (MQ=255)
gTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCaa < 1:554177/139‑1 (MQ=255)
gTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATACAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCaa < 1:802917/139‑1 (MQ=255)
cacCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGcc > 1:546450/1‑139 (MQ=255)
acCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGa < 1:93947/101‑1 (MQ=255)
acCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGa > 2:93947/1‑101 (MQ=255)
ttCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCa > 2:482990/1‑139 (MQ=255)
aTTATGCAAATAAATATCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAaaaac > 2:499631/1‑139 (MQ=255)
taaataTCTCTGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACAt > 1:305568/1‑139 (MQ=255)
ctctGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCaaaaa > 2:447969/1‑139 (MQ=255)
tctGAATATAATATATTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAAt > 2:44620/1‑139 (MQ=255)
aatataTTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCttttt > 1:179108/1‑139 (MQ=255)
atTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTTTGGAAAACGCCTCGCaaaa < 2:745878/105‑1 (MQ=255)
atTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCaaaa > 1:745878/1‑105 (MQ=255)
atTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCaaa > 2:500432/1‑104 (MQ=255)
atTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCaaa < 1:500432/104‑1 (MQ=255)
atTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTaaa > 1:1110760/1‑139 (MQ=255)
atTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTaaa > 1:799298/1‑139 (MQ=255)
atTCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTaaa < 1:447969/139‑1 (MQ=255)
tCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCaa < 1:751914/69‑1 (MQ=255)
tCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCaa > 2:751914/1‑69 (MQ=255)
tCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAaacaac < 1:814750/113‑1 (MQ=255)
tCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAaacaac > 2:814750/1‑113 (MQ=255)
tCATAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATg > 2:608029/1‑139 (MQ=255)
aTAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCaa < 2:240520/67‑1 (MQ=255)
aTAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCaa > 1:240520/1‑67 (MQ=255)
aTAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGc < 1:93617/97‑1 (MQ=255)
aTAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGc > 2:93617/1‑97 (MQ=255)
aTAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGAt > 1:536425/1‑139 (MQ=255)
tAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGtaa > 2:343804/1‑48 (MQ=255)
tAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGtaa < 1:343804/48‑1 (MQ=255)
tAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAaac < 1:536172/58‑1 (MQ=255)
tAGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAaac > 2:536172/1‑58 (MQ=255)
aGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCg < 2:1118895/122‑1 (MQ=255)
aGCGCCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCg > 1:1118895/1‑122 (MQ=255)
|
GGTGGCAGTACTGACCGGTCTGTGATGAAAGATTAATTTCACCTTAAATCCTGGTGCTGTTAGGATGCTGACGTTTTTCGGCTACACCATTCAGATTATGCAAATAAATATCTCTGAATATAATATATTCATAGCACCCATAATTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGAT > NC_000913/4078966‑4079234
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
