Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I1 R1 57 49.8 2216334 94.8% 2101084 113.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 584,639 C→T intergenic (+209/+41) appY → / ← ompT global transcriptional activator, DLP12 prophage/DLP12 prophage, outer membrane protease VII, outer membrane protein 3b

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913584,6390CT100.0% 348.2 / NA 99intergenic (+209/+41)appY/ompTglobal transcriptional activator, DLP12 prophage/DLP12 prophage, outer membrane protease VII, outer membrane protein 3b
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (49/50);  total (49/50)

ACCATTAATTTGTAATTGGGTTGCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCCCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGAAGTGTTATTATTG  >  NC_000913/584504‑584770
                                                                                                                                       |                                                                                                                                   
aCCATTAATTTGTAATTGGGTTGCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCgg                                                                                                                                  >  1:605526/1‑139 (MQ=255)
 ccATTAATTTGTAATTGGGTTGCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCggg                                                                                                                                 <  2:332214/139‑1 (MQ=255)
   aTTAATTTGTAATTGGGTTGCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGc                                                                                                                               >  1:538255/1‑139 (MQ=255)
   aTTAATTTGTAATTGGGTTGCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGc                                                                                                                               >  2:76159/1‑139 (MQ=255)
    ttAATTTGTAATTGGGTTGCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCggg                                                                                                                                 >  2:405604/1‑136 (MQ=255)
    ttAATTTGTAATTGGGTTGCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCggg                                                                                                                                 <  1:405604/136‑1 (MQ=255)
                      gCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGaaa                                                                                                            >  1:569747/1‑139 (MQ=255)
                                  tttATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAGCCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCg                                                                                                <  1:746605/139‑1 (MQ=255)
                                  tttATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCg                                                                                                <  1:76159/139‑1 (MQ=255)
                                      tacatacTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCt                                                                                            >  2:241591/1‑139 (MQ=255)
                                           acTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTaaaa                                                                                       >  1:883227/1‑139 (MQ=255)
                                           acTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTaaaa                                                                                       >  2:602122/1‑139 (MQ=255)
                                           acTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTaaaa                                                                                       >  2:702821/1‑139 (MQ=255)
                                           acTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTaaaa                                                                                       >  2:1083462/1‑139 (MQ=255)
                                           acTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCT‑GTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAAt                                                                                      >  1:448686/1‑139 (MQ=255)
                                            cTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAAt                                                                                      >  1:1053666/1‑139 (MQ=255)
                                              ataATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAAtgt                                                                                    <  2:41818/139‑1 (MQ=255)
                                               taATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAAtgtg                                                                                   <  1:241591/139‑1 (MQ=255)
                                               taATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAAtgtg                                                                                   <  2:538255/139‑1 (MQ=255)
                                                  ttGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTAc                                                                                >  2:827774/1‑139 (MQ=255)
                                                  ttGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTAc                                                                                >  2:592751/1‑139 (MQ=255)
                                                    gATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACtt                                                                              >  2:410424/1‑139 (MQ=255)
                                                     aTGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTa                                                                             >  2:400601/1‑139 (MQ=255)
                                                     aTGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTa                                                                             >  2:319522/1‑139 (MQ=255)
                                                       ggTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAg                                                                           >  1:1041927/1‑139 (MQ=255)
                                                       ggTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAg                                                                           <  1:400601/139‑1 (MQ=255)
                                                       ggTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAg                                                                           >  1:342771/1‑139 (MQ=255)
                                                       ggTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAg                                                                           <  1:341520/139‑1 (MQ=255)
                                                       ggTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAg                                                                           >  2:264703/1‑139 (MQ=255)
                                                           ttCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACca                                                                       >  1:33642/1‑139 (MQ=255)
                                                            tCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACcag                                                                      <  2:569747/139‑1 (MQ=255)
                                                            tCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACcag                                                                      <  2:342771/139‑1 (MQ=255)
                                                                   gATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCagtagt                                                               >  1:32004/1‑139 (MQ=255)
                                                                     tttAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGtga                                                             <  1:319522/139‑1 (MQ=255)
                                                                        aGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGtgatga                                                          >  1:1009270/1‑139 (MQ=255)
                                                                             atatCCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTta                                                     <  2:1041927/139‑1 (MQ=255)
                                                                             ataaCCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTta                                                     <  1:264703/139‑1 (MQ=255)
                                                                               aaCCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTtata                                                   <  1:592751/139‑1 (MQ=255)
                                                                               aaCCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTtata                                                   <  1:702821/139‑1 (MQ=255)
                                                                                    tCTGGGTTTATTTTAAGGGTTAATTGTTGCATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCg                                                                                                <  1:780198/89‑1 (MQ=255)
                                                                                    tCTGGGTTTATTTTAAGGGTTAATTGTTGCATTGAAATGGCTAGATATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCg                                                                                                >  2:780198/1‑89 (MQ=255)
                                                                                    tCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCt                                                                                                                    >  2:400880/1‑69 (MQ=255)
                                                                                    tCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCt                                                                                                                    <  1:400880/69‑1 (MQ=255)
                                                                                    tCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGACGTTATAGtttt                                              >  1:718649/1‑139 (MQ=255)
                                                                                    tCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTtata                                                   <  2:1009901/134‑1 (MQ=255)
                                                                                    tCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTtata                                                   >  1:1009901/1‑134 (MQ=255)
                                                                                      tGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTGTTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCt                                            >  1:294209/1‑139 (MQ=255)
                                                                                      tGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCg                                                                                                >  1:574574/1‑87 (MQ=255)
                                                                                      tGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCg                                                                                                <  2:574574/87‑1 (MQ=255)
                                                                                        ggTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAg                                                  <  2:81644/131‑1 (MQ=255)
                                                                                        ggTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAg                                                  >  1:81644/1‑131 (MQ=255)
                                                                                          tttATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATAc                                        >  2:674705/1‑139 (MQ=255)
                                                                                          tttATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATAc                                        <  2:718649/139‑1 (MQ=255)
                                                                                          tttATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATAc                                        <  1:410424/139‑1 (MQ=255)
                                                                                           ttATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATAcc                                       <  2:32004/139‑1 (MQ=255)
                                                                                            tATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTTATGAAGTTATAGTTTTTTATACCt                                      <  1:674705/139‑1 (MQ=255)
                                                                                             aTTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACcagcag                                                                   <  1:285017/109‑1 (MQ=255)
                                                                                             aTTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACcagcag                                                                   >  2:285017/1‑109 (MQ=255)
                                                                                                ttAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTc                                  <  2:33642/139‑1 (MQ=255)
                                                                                                 tAATGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTcc                                 <  1:1083462/139‑1 (MQ=255)
                                                                                                  aaGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCtt                                                                                           >  2:628895/1‑80 (MQ=255)
                                                                                                  aaGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCtt                                                                                           <  1:628895/80‑1 (MQ=255)
                                                                                                        tAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACcag                                                                      >  1:448501/1‑95 (MQ=255)
                                                                                                        tAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACcag                                                                      <  2:448501/95‑1 (MQ=255)
                                                                                                        tAATTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTg                          >  2:754102/1‑139 (MQ=255)
                                                                                                         aaTTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCt                                                                                                                    >  2:714673/1‑48 (MQ=255)
                                                                                                         aaTTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCt                                                                                                                    <  1:714673/48‑1 (MQ=255)
                                                                                                          aTTGTTACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCt                        <  2:1009270/139‑1 (MQ=255)
                                                                                                               tACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATAc                                        <  1:613314/118‑1 (MQ=255)
                                                                                                               tACATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATAc                                        >  2:613314/1‑118 (MQ=255)
                                                                                                                aCATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAACATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTc                  >  2:1015055/1‑139 (MQ=255)
                                                                                                                aCATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAg                                                                           <  2:24738/82‑1 (MQ=255)
                                                                                                                aCATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAg                                                                           >  1:24738/1‑82 (MQ=255)
                                                                                                                aCATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGAcc                                                                        >  2:943375/1‑85 (MQ=255)
                                                                                                                aCATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGAcc                                                                        <  1:943375/85‑1 (MQ=255)
                                                                                                                aCATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACcagcag                                                                   >  2:180168/1‑90 (MQ=255)
                                                                                                                aCATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACcagcag                                                                   <  1:180168/90‑1 (MQ=255)
                                                                                                                 cATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTGTAGTTTTCTATACCTGCTCCATTTTTGCt                        >  1:694800/1‑132 (MQ=255)
                                                                                                                 cATTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCt                        <  2:694800/132‑1 (MQ=255)
                                                                                                                  aTTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTg                <  2:681317/139‑1 (MQ=255)
                                                                                                                  aTTGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTg                <  1:754102/139‑1 (MQ=255)
                                                                                                                  aTTGAAATGGCT‑GTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGa               <  2:448686/139‑1 (MQ=255)
                                                                                                                    tGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGAc                                                                         <  1:623254/80‑1 (MQ=255)
                                                                                                                    tGAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGAc                                                                         >  2:623254/1‑80 (MQ=255)
                                                                                                                     gAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGAAg             <  1:416518/139‑1 (MQ=255)
                                                                                                                     gAAATGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGAAg             <  1:602122/139‑1 (MQ=255)
                                                                                                                      aaaTGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGt                                                 >  1:790997/1‑102 (MQ=255)
                                                                                                                      aaaTGGCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGt                                                 <  2:790997/102‑1 (MQ=255)
                                                                                                                           gCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCg                                                                                                <  1:862796/50‑1 (MQ=255)
                                                                                                                           gCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCg                                                                                                >  2:862796/1‑50 (MQ=255)
                                                                                                                           gCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGt                      <  1:133299/124‑1 (MQ=255)
                                                                                                                           gCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGt                      >  2:133299/1‑124 (MQ=255)
                                                                                                                           gCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGaa              >  1:265681/1‑132 (MQ=255)
                                                                                                                           gCTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGaa              <  2:265681/132‑1 (MQ=255)
                                                                                                                            cTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATAcc                                       <  1:355049/106‑1 (MQ=255)
                                                                                                                            cTAGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATAcc                                       >  2:355049/1‑106 (MQ=255)
                                                                                                                              aGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGAAgtgt          >  1:644612/1‑133 (MQ=255)
                                                                                                                              aGTTATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGAAgtgt          <  2:644612/133‑1 (MQ=255)
                                                                                                                                ttATTCCTCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGAAGTGTTATTATtg  <  2:605526/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                   
ACCATTAATTTGTAATTGGGTTGCTGTCGCCTATTTTATACATACTATAATTGATGGTTTTCTATGTGATTTAGTTAATAACCTTCTGGGTTTATTTTAAGGGTTAATTGTTACATTGAAATGGCTAGTTATTCCCCGGGGCGATTTTCACCTCGGGGAAATTTTAGTTGGCGTTCTTAAAATGTGTACTTAAGACCAGCAGTAGTGATGAAGTTATAGTTTTCTATACCTGCTCCATTTTTGCTGTAGTCTGAAGTGTTATTATTG  >  NC_000913/584504‑584770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A