Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
57 |
49.8 |
2216334 |
94.8% |
2101084 |
113.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
698,107 |
A→G |
G357G (GGT→GGC) |
asnB ← |
asparagine synthetase B |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 698,107 | 0 | A | G | 100.0%
| 264.4
/ NA
| 68 | G357G (GGT→GGC) | asnB | asparagine synthetase B |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (36/32); total (36/32) |
GCGTGCTTCCACGCCCCAGGCTGACATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAACCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGAAGCGCGAATAGTGGTCACATCATAAGTTTCGATGTGGTAAA > NC_000913/697975‑698240
|
gcgTGCTTCCACGCCCCAGGCTGACATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGccgccg < 2:18802/139‑1 (MQ=255)
cGCCCCAGGCTGACATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTtcatc < 2:397175/139‑1 (MQ=255)
tGACATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCa < 2:390052/139‑1 (MQ=255)
aCATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCAcc > 2:1021711/1‑139 (MQ=255)
aCATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCAcc > 2:200249/1‑139 (MQ=255)
cATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCg > 2:322221/1‑139 (MQ=255)
cATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCg > 1:600281/1‑139 (MQ=255)
aTCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCgg < 1:322221/139‑1 (MQ=255)
gCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACa > 2:621495/1‑139 (MQ=255)
cTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCTGAACCTTCACCGGACAg < 2:485818/139‑1 (MQ=255)
ttgttgGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCa < 2:13207/139‑1 (MQ=255)
tgGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGaa > 2:456984/1‑106 (MQ=255)
tgGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGaa < 1:456984/106‑1 (MQ=255)
cgcgcgCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTaa < 1:792408/139‑1 (MQ=255)
cgcgcgCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTaa < 1:288137/139‑1 (MQ=255)
cgcgcAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCAc > 2:84849/1‑119 (MQ=255)
cgcgcAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCAc < 1:84849/119‑1 (MQ=255)
cgcgcAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATg > 2:353516/1‑139 (MQ=255)
cgcAGTCATACATATGCAGGGCTAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGcc > 2:515268/1‑139 (MQ=255)
gcAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGccc < 2:87789/139‑1 (MQ=255)
atacataTGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGcc < 1:200249/139‑1 (MQ=255)
atGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATc > 2:211119/1‑139 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAacac < 1:581982/85‑1 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAacac > 2:581982/1‑85 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCa > 1:748002/1‑111 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCa < 2:748002/111‑1 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCa < 1:464150/111‑1 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCa > 2:464150/1‑111 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCtt > 1:640346/1‑139 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCtt > 1:893750/1‑139 (MQ=255)
gCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCtt > 2:145291/1‑139 (MQ=255)
gggCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcg < 2:893750/139‑1 (MQ=255)
ggCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCGTTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCGTGATCTTAcgc > 1:721141/1‑139 (MQ=255)
ggCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcgc > 2:756903/1‑139 (MQ=255)
ggCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcgc > 2:310776/1‑139 (MQ=255)
ggCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcg < 2:1077421/138‑1 (MQ=255)
ggCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcg > 1:1077421/1‑138 (MQ=255)
ccAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGaa < 2:372526/76‑1 (MQ=255)
ccAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGaa > 1:372526/1‑76 (MQ=255)
ccAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGa > 2:48478/1‑139 (MQ=255)
ccAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGa > 2:691935/1‑139 (MQ=255)
gcagTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAAt < 2:1099402/112‑1 (MQ=255)
gcagTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAAt > 1:1099402/1‑112 (MQ=255)
aCCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCg > 2:121116/1‑139 (MQ=255)
gTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGgtg > 2:488859/1‑139 (MQ=255)
gTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGgtg > 2:512553/1‑139 (MQ=255)
ctTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGa < 2:214464/139‑1 (MQ=255)
ctTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGa < 1:353516/139‑1 (MQ=255)
tGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGAAgcgc > 2:969731/1‑139 (MQ=255)
tGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGAAgcgc > 2:104589/1‑139 (MQ=255)
gTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcgcg < 1:56666/108‑1 (MQ=255)
gTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcgcg > 2:56666/1‑108 (MQ=255)
tCTTTGGGATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCtt > 2:724325/1‑95 (MQ=255)
tCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCg > 2:184452/1‑66 (MQ=255)
tCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCg < 1:184452/66‑1 (MQ=255)
tCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCtt < 1:724325/95‑1 (MQ=255)
tGGCATTCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGAAGCGCGAATAGTGGt < 1:691935/139‑1 (MQ=255)
ttCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAac > 1:414803/1‑36 (MQ=255)
ttCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAac < 2:414803/36‑1 (MQ=255)
ttCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcgcg < 1:88703/97‑1 (MQ=255)
ttCGGTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTAcgcg > 2:88703/1‑97 (MQ=255)
ggTGCTTTGTGGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGAAGCGCGAATAGTGGTCAcatcat < 1:512553/139‑1 (MQ=255)
tgtgGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCAt > 2:562193/1‑70 (MQ=255)
tgtgGAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCAt < 1:562193/70‑1 (MQ=255)
gAAGTAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCTCCTTGATCTTACGCGACATTAAATACATCGGTGTTGAAGCGCGAATAGTGGTCACATCATAAGTTTCGAtg < 2:611838/139‑1 (MQ=255)
tAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGa < 2:50839/101‑1 (MQ=255)
tAAAGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGa > 1:50839/1‑101 (MQ=255)
aGATAGCCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGAAGCGCGAATAGTGGTCACATCATAAGTTTCGATGTGGTaaa < 1:488859/139‑1 (MQ=255)
|
GCGTGCTTCCACGCCCCAGGCTGACATCGCTTTGTTGGCACGCGCGCAGTCATACATATGCAGGGCCAGCAGTTTACGCACCGTCTCTTCATGCAGTTCTTTGGCATTCGGTGCTTTGTGGAAGTAAAGATAACCGCCGAACACTTCATCAGAACCTTCACCGGACAGCACCATTTTAATGCCCATCGCCTTGATCTTACGCGACATTAAATACATCGGTGTTGAAGCGCGAATAGTGGTCACATCATAAGTTTCGATGTGGTAAA > NC_000913/697975‑698240
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A