Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F412 I2 R1 70 105.0 5244496 94.3% 4945559 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,451,758 A→G Q234R (CAG→CGG)  ytfR → putative sugar ABC transporter ATPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,451,7580AG100.0% 341.5 / NA 98Q234R (CAG→CGG) ytfRputative sugar ABC transporter ATPase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (45/53);  total (45/53)

CTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCAGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCGTTGCC  >  NC_000913/4451662‑4451852
                                                                                                |                                                                                              
ctcactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGAt                                                                                             >  1:1841797/1‑100 (MQ=255)
ctcactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGAt                                                                                             >  1:2479261/1‑100 (MQ=255)
ctcactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGAt                                                                                             >  1:290066/1‑100 (MQ=255)
 tcactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATc                                                                                            <  2:1770777/100‑1 (MQ=255)
 tcactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATc                                                                                            <  2:1704396/100‑1 (MQ=255)
 tcactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATc                                                                                            >  2:1532797/1‑100 (MQ=255)
 tcactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATc                                                                                            <  1:560908/100‑1 (MQ=255)
  cactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCg                                                                                           >  1:944088/1‑100 (MQ=255)
  cactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCg                                                                                           >  1:398425/1‑100 (MQ=255)
  cactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCg                                                                                           >  2:114212/1‑100 (MQ=255)
  cactTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCg                                                                                           <  2:935756/100‑1 (MQ=255)
   actTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGa                                                                                          >  2:2314976/1‑100 (MQ=255)
   actTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGGCGGGAAACGTGCGAGCTACCGCGGATCGa                                                                                          >  1:2629499/1‑100 (MQ=255)
    ctTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGCGCTACCGCGGATCGaa                                                                                         >  1:2175057/1‑100 (MQ=255)
     tttCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAAc                                                                                        <  1:422075/100‑1 (MQ=255)
     tttCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAAc                                                                                        <  1:2596017/100‑1 (MQ=255)
     tttCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAAc                                                                                        <  2:911707/100‑1 (MQ=255)
      ttCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACt                                                                                       <  1:648943/100‑1 (MQ=255)
      ttCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACt                                                                                       >  2:1431102/1‑100 (MQ=255)
      ttCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACt                                                                                       >  1:1238091/1‑100 (MQ=255)
       tctcGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTg                                                                                      <  1:1696044/100‑1 (MQ=255)
       tctcGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTGTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTg                                                                                      <  1:72520/100‑1 (MQ=255)
        ctcGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTgg                                                                                     >  1:1632269/1‑100 (MQ=255)
        ctcGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTgg                                                                                     <  1:90190/100‑1 (MQ=255)
         tcGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGt                                                                                    <  2:1812053/100‑1 (MQ=255)
         tcGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGt                                                                                    <  1:386815/100‑1 (MQ=255)
         tcGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGt                                                                                    <  1:2172216/100‑1 (MQ=255)
            aTCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGGAACGCCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTaaa                                                                                 >  1:2295967/1‑100 (MQ=255)
               atgTCTATAAGCTCGGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGGAGGCTGTCGGGAAACGTGCGAGCTCCCGCGGATCGAACTGGTAAAAat                                                                              <  2:2074109/98‑1 (MQ=255)
                ggTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAatg                                                                             >  1:2212754/1‑100 (MQ=255)
                ggTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAatg                                                                             <  2:1587205/100‑1 (MQ=255)
                ggTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAatg                                                                             <  2:490796/100‑1 (MQ=255)
                ggTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAatg                                                                             >  2:2466701/1‑100 (MQ=255)
                ggTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAatg                                                                             >  2:72211/1‑100 (MQ=255)
                  tCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAatgat                                                                           <  2:1949957/100‑1 (MQ=255)
                  tCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAatgat                                                                           <  1:335829/100‑1 (MQ=255)
                         ggTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTCCCGCGGAGCGAACTGGTAAAAATGATGCTcggg                                                                    >  2:2045573/1‑100 (MQ=255)
                         ggTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTgggg                                                                    <  2:1580319/100‑1 (MQ=255)
                             cgccaTCGCATCACCGTCCGACGCAACGGCAGGCTCTTAGGCTGTCGGGAAACCTCCCAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGcgcg                                                                <  1:2170054/96‑1 (MQ=255)
                             aGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGcgcg                                                                <  1:1395978/100‑1 (MQ=255)
                              gCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGa                                                               >  1:848161/1‑100 (MQ=255)
                              gCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGa                                                               >  2:1092229/1‑100 (MQ=255)
                                ggtCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGc                                                             <  1:1004732/98‑1 (MQ=255)
                                  tCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTg                                                           <  1:287481/100‑1 (MQ=255)
                                    ggATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGa                                                         >  2:1021550/1‑100 (MQ=255)
                                    ggATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGa                                                         <  2:415763/100‑1 (MQ=255)
                                    ggATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGa                                                         >  1:1839163/1‑100 (MQ=255)
                                    ggATCACCATCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGa                                                         >  2:2487783/1‑100 (MQ=255)
                                     gATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGAt                                                        >  2:1283560/1‑100 (MQ=255)
                                       tCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATAc                                                      <  2:1314403/100‑1 (MQ=255)
                                        cACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATAcc                                                     <  1:478316/100‑1 (MQ=255)
                                         aCCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATAccc                                                    <  2:274550/100‑1 (MQ=255)
                                          ccGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCa                                                   >  1:2318550/1‑100 (MQ=255)
                                           cGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCAc                                                  <  1:1181357/100‑1 (MQ=255)
                                             tCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCAcgc                                                <  1:1354153/100‑1 (MQ=255)
                                              cTTACGCAACGGCAGTTTCGTCGGCTGTCGGGAAACGTGCGAGCTACCGCGGCACGACCTGGTAAAAATCATGCTGGGGCGCGCGCTGGATACCCAcgcg                                               >  2:1256641/1‑100 (MQ=255)
                                                  cGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTAc                                           >  1:411784/1‑100 (MQ=255)
                                                  cGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTAc                                           >  1:726186/1‑100 (MQ=255)
                                                    cAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAg                                         <  1:962797/100‑1 (MQ=255)
                                                    cAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAg                                         <  1:277948/100‑1 (MQ=255)
                                                      aCGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCg                                       <  2:911705/100‑1 (MQ=255)
                                                            gTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCgg                                 >  2:460566/1‑100 (MQ=255)
                                                            gTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCgg                                 >  1:1077069/1‑100 (MQ=255)
                                                            gTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCgg                                 <  1:1466059/100‑1 (MQ=255)
                                                             tttCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCggg                                <  1:2544584/100‑1 (MQ=255)
                                                             tttCGCCGGGTGTCGGGAAACGTGCGAGATAACGGGGATCGAAATGGTAAAAATGATGCCGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCggg                                <  2:764845/100‑1 (MQ=255)
                                                               tCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCg                              >  1:2423373/1‑100 (MQ=255)
                                                                cGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGa                             <  1:767369/100‑1 (MQ=255)
                                                                cGTAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGa                             <  2:2289915/100‑1 (MQ=255)
                                                                  tAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAAc                           <  1:1523024/100‑1 (MQ=255)
                                                                  tAGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAAc                           >  1:1750552/1‑100 (MQ=255)
                                                                   aGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACa                          <  2:268566/100‑1 (MQ=255)
                                                                   aGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACa                          <  2:760928/100‑1 (MQ=255)
                                                                   aGGCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACa                          <  1:1078788/100‑1 (MQ=255)
                                                                    ggCTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACAt                         >  1:2219544/1‑100 (MQ=255)
                                                                      cTGTCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACAttg                       <  1:1681970/100‑1 (MQ=255)
                                                                         tCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACAttgttg                    <  1:1353146/100‑1 (MQ=255)
                                                                         tCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACAttgttg                    <  1:1674579/100‑1 (MQ=255)
                                                                         tCGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACAttgttg                    <  2:244049/100‑1 (MQ=255)
                                                                          cGGGAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGa                   >  1:2424687/1‑100 (MQ=255)
                                                                           gggAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAg                  >  1:2330007/1‑100 (MQ=255)
                                                                           gggAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAg                  >  2:1806069/1‑100 (MQ=255)
                                                                            ggAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTTAGc                 <  2:2384857/100‑1 (MQ=255)
                                                                             gAAACGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCg                <  2:679188/100‑1 (MQ=255)
                                                                             gAAACGGGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCGGGATACCCACGCGCTACAGCGTGGCGGGCGAACATTGTTGAGCg                <  2:1673421/100‑1 (MQ=255)
                                                                                aCGTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACa             <  1:1239637/100‑1 (MQ=255)
                                                                                  gTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACaaa           >  1:10469/1‑100 (MQ=255)
                                                                                  gTGCGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACaaa           >  1:2010500/1‑100 (MQ=255)
                                                                                    gCGAGCTACCGCGGATCGAACTCGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGGGCCGGGCGAACATTGTTGAGCGACAAAcc         <  2:466879/100‑1 (MQ=255)
                                                                                     cGAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAAccc        >  2:620224/1‑100 (MQ=255)
                                                                                      gAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCg       >  1:686494/1‑100 (MQ=255)
                                                                                      gAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCg       >  1:315474/1‑100 (MQ=255)
                                                                                      gAGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCg       >  1:2321567/1‑100 (MQ=255)
                                                                                       aGCTACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCGt      <  1:2218287/100‑1 (MQ=255)
                                                                                       aGCGACGGCGGATCGAACTGGTAAAAATGATGGTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGTGAACATTGTTGAGCGACCAACCCGt      >  2:1048482/1‑100 (MQ=255)
                                                                                          tACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCGTTGc   >  2:1922182/1‑100 (MQ=255)
                                                                                          tACCGCGGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCGTTGc   <  1:1302239/100‑1 (MQ=255)
                                                                                           aCCGCGGATCGAACTGGTAACAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCGTTGcc  >  1:2067063/1‑100 (MQ=255)
                                                                                                |                                                                                              
CTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCAGATCGAACTGGTAAAAATGATGCTGGGGCGCGAGCTGGATACCCACGCGCTACAGCGTGCCGGGCGAACATTGTTGAGCGACAAACCCGTTGCC  >  NC_000913/4451662‑4451852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A